Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D04
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    31   0.94 
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    30   2.9  
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    29   3.8  
08_01_0924 - 9104908-9105366                                           29   5.0  
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    29   5.0  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    29   6.6  
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237...    28   8.8  

>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 295 NLPPERRHGGSDLTRHIITTITNSSAVDSQDNG 393
           N PP RRHG S++   I+    +S+  DS D+G
Sbjct: 126 NRPP-RRHGNSEVVSEIVVASPSSNCSDSDDHG 157


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 222 NILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFGFDTPHNYNDHELFCGGFSRQ 389
           ++L C++V+I L +        LI PP R S W+ G    ++  D E   G F ++
Sbjct: 220 DVLRCFMVIIYLDFKDFGIRNILIGPPPRISVWKGGMIKEYSKMD-ECKTGDFGKR 274


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 453 AH-ELGGRFGKGIIVRKYAPKSTITIKVELTASHNGFFEFRVCEEPNLQRKNAXTNTFS 626
           AH +LG  +  G+  RK++P  T+T       S NG F   V    NL   +   N FS
Sbjct: 175 AHVDLGANYLTGLDFRKFSPMPTMTFLSLFLNSLNGSFPEFVIRSGNLTFLDLSHNNFS 233


>08_01_0924 - 9104908-9105366
          Length = 152

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 406 PSFLFH-CLENPPQKSS*SL*LCGVSNPNLHADAREGGSMRRP*PLALPHDNAITTSQ 236
           P+FL    +  PP   + S  +  V++P    DA EGG+  RP P  +    A+  +Q
Sbjct: 94  PTFLAAPIVRRPPSTDTSSSAVAEVASPENGCDAAEGGAASRPPPQPVAARQAVQLAQ 151


>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 553 MDSLSSEFAKNQIYNARML 609
           MDSL+S+ +KNQ+Y  RM+
Sbjct: 355 MDSLNSDLSKNQLYAVRMM 373


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 545 QSQWIL*VQSLRRTKSTTQECLXKYVLXMDGKDSTKFYPR 664
           +S W+    S+RR      + L   VL  D +DSTKFYPR
Sbjct: 634 KSLWLEKEDSIRRGLF---DLLQNIVLIRDPEDSTKFYPR 670


>04_04_0910 -
           29321128-29321276,29321977-29322508,29323301-29323706,
           29323933-29324028,29324563-29324645,29326620-29326732,
           29327156-29327315
          Length = 512

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 198 TGSVIVKMNILWCWLVVIALSWGRASGHGRLIEPPSRASAWRFG 329
           T +V     +   W +V  +  GR+ G+G ++ P   A+ W FG
Sbjct: 358 TAAVAFPEGVARTWPMVGVMRHGRSDGNGEVVRP--EAAVWPFG 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,435,396
Number of Sequences: 37544
Number of extensions: 480679
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)