Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D04
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family ...    29   3.4  
U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family ...    29   3.4  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    29   6.0  

>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -2

Query: 261 MTMLLPPASTIKYSFSLSHFPYIRYFNFYFRCMKKKKTQFTDYFYGI*YVLI*KSFPGTN 82
           + ++ PP   I+ +F++       YF+F F  ++  K    D F+G   ++I K  P   
Sbjct: 389 VAVIAPPTWPIR-AFAIISADLFFYFSFVFATLRLMKIANVDAFFGSIVLMIKKMIPIMV 447

Query: 81  RFLMSLLFF 55
           +F+   + F
Sbjct: 448 KFMFVFMVF 456


>U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform a protein.
          Length = 95

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 348 YNDHELFCGGFSRQWNKNDGKCGVCGDPWDASTPRAHELGGRFGKGIIVRKYAPK 512
           Y   E+  GG+  +W+K   KC +C    D+ T   HE    + K    RK+ PK
Sbjct: 19  YAAEEMSAGGY--KWHKFCFKCNMCNKLLDSCTVAPHE-AELYCKQCHGRKFGPK 70


>U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform b protein.
          Length = 113

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 348 YNDHELFCGGFSRQWNKNDGKCGVCGDPWDASTPRAHELGGRFGKGIIVRKYAPK 512
           Y   E+  GG+  +W+K   KC +C    D+ T   HE    + K    RK+ PK
Sbjct: 19  YAAEEMSAGGY--KWHKFCFKCNMCNKLLDSCTVAPHE-AELYCKQCHGRKFGPK 70


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 PPASTIKYSFSLSHFPYIRYFN 181
           PP ST  ++FS+S +PY+  F+
Sbjct: 345 PPMSTYLFAFSVSDYPYLETFS 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,057,453
Number of Sequences: 27780
Number of extensions: 410854
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)