Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_D03
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 611 PAGPKPDGSNRYVAVAIGPNADPDQKQKLETVKEMMRHAWNNYKLYAWGKNE 766
           P G   D     + + +    D + K ++ T    +   WN+YKL  W  ++
Sbjct: 38  PVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKL-KWNPDD 88


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 770 SVHFYP-KRTVCNCSKRVASSL 708
           +VH  P K  +CN  KRV SSL
Sbjct: 24  NVHTRPSKEPICNICKRVYSSL 45


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 23  RLGLTVV--CRTVSIYIFSILGV 85
           RL   VV  C T ++Y+ S++G+
Sbjct: 150 RLSFCVVLACSTATVYVMSVVGL 172


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 624 LGPAGDASLAAKFLTAGSSIASTGGLLGPR 535
           LG    A   A  L  GSS  +   +LGPR
Sbjct: 176 LGAVDIAGSGAVHLVGGSSALACAIMLGPR 205


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 686 KQKLETVKEMMRHAWNNYKLYAWGKNE 766
           K ++ T    +   WN+YKL  W   E
Sbjct: 76  KNQVMTTNVWVEQRWNDYKL-KWNPEE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,261
Number of Sequences: 438
Number of extensions: 5314
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)