Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C23
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 82 5e-16
03_02_0825 + 11565701-11565862,11565963-11566154,11567674-115677... 31 1.7
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 29 3.8
12_02_0122 + 13923510-13925081 29 5.1
11_06_0077 - 19843056-19844984 29 5.1
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 29 6.7
02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903... 29 6.7
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 28 8.9
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 28 8.9
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 82.2 bits (194), Expect = 5e-16
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Frame = +1
Query: 7 TTRPRRDYEVDGRDYHFVASREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 186
TTR R+ E+DG YHF R ++E +I F+E + N+YGTSV +V V ++GK
Sbjct: 209 TTRAPREKEIDGVHYHFT-ERSKIEEEISEGKFLEFAHVHGNVYGTSVEAVESVTDEGKR 267
Query: 187 CILDVSGNAIKRLQVAQLFPIAIFIKPKSVESI---MEMNKRMTEEQAKKTYERA-LKME 354
CILD+ + ++ + L I IF+ P S E + + TEEQ +K A +++
Sbjct: 268 CILDIDVQGARSVRASSLEAIFIFVCPPSFEELEKRLRARGTETEEQIQKRLRNARAELD 327
Query: 355 QEFAE-YFTAVVTGDTPEEIYSKVKAVIAAE 444
Q + F ++ D E Y +K +++ +
Sbjct: 328 QSNSPGLFDHLLVNDDLEACYENLKKLLSLD 358
>03_02_0825 +
11565701-11565862,11565963-11566154,11567674-11567718,
11568224-11568535,11569036-11569092
Length = 255
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 7 TTRPRRDYEVDGRDYHFVASRE 72
T+R +R EVDG+DY+FV E
Sbjct: 70 TSRAKRPGEVDGKDYYFVTKEE 91
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/87 (20%), Positives = 45/87 (51%)
Frame = +1
Query: 103 FIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKPKSVES 282
F+ +YN +YG+ ++S R + GK + + +A++ + A P ++ + + +
Sbjct: 755 FLSREEYNQLVYGSVLSSTRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITT 814
Query: 283 IMEMNKRMTEEQAKKTYERALKMEQEF 363
I+ +T+ + T E+ ++E+E+
Sbjct: 815 IL---NHVTKGRPPFTVEKKGRIEKEY 838
>12_02_0122 + 13923510-13925081
Length = 523
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 261 QTKECRVYNGNEQENDRRTSEEN 329
+TKE NG ++ D+RTSEEN
Sbjct: 495 KTKEQATTNGEDEGKDKRTSEEN 517
>11_06_0077 - 19843056-19844984
Length = 642
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 266 GLINMAIGNSCATCNLLIALPLTSKMQCLPFSATSRTDATDVPYRLSLYWPA 111
GL++ I N C +L + + ++C+ A R +A DV RL + W A
Sbjct: 249 GLLDTEIANEC-NMKILEGIGKLA-VECVAIDANKRPNANDVEKRLLMLWAA 298
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 79 ERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 186
E+ I+NH E+GQ Y + V E+ E+GKH
Sbjct: 191 EKIIRNHKLRESGQGQHQTYALGIKEVWEI-EEGKH 225
>02_05_0885 -
32488750-32489145,32489372-32490040,32490245-32490301,
32490814-32491152
Length = 486
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 179 PFSATSRTDATDVPYRLSLY 120
P S T RT A+D+PYR+ Y
Sbjct: 423 PISVTDRTKASDLPYRVCRY 442
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 25 DYEVDGRDYHFVASREQMERDIQN 96
DYE++ RD F ASR M+ D N
Sbjct: 269 DYEINDRDKDFPASRSSMDLDQSN 292
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 334 ERALKMEQEFAEYFTAVVTGDTPEEIYSKVKAVIAAE 444
E K + F+EY + D E +Y KV A I A+
Sbjct: 211 EEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRAD 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,094,926
Number of Sequences: 37544
Number of extensions: 352421
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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