Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C22
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.17 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 467 GLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQS 354
           GL   G SGAALIA       +PE   +V I  D +++
Sbjct: 301 GLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRN 338


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 360 YGIFPDENKCDVFWNC 407
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 658 PFSXSETPTALVTAKTPXT 714
           PF  S   T +VTA TP T
Sbjct: 4   PFLSSSVSTVIVTALTPST 22


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
 Frame = +3

Query: 165 HHISCDKYWKCDNGV-----AELKTCGNGL-AFDATDSKYLTE 275
           H  SCD+ W  D G        ++ C   L  FD T  K L +
Sbjct: 134 HADSCDRLWVLDTGTIGIGNTTIQACPYTLNIFDLTSDKLLRQ 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -2

Query: 476 ADAGLSVVGKSGAALIAGGFSVPAV----PENVA 387
           + AG+ VVG + A+++AG  S+  V    PE++A
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLA 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 741 LHSSPXIRERXRGLXSYQC 685
           LH +P +RE   G  +++C
Sbjct: 33  LHDNPSLREGLAGASTFRC 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,920
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)