Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C21
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    31   1.2  
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578...    29   4.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    29   4.9  
04_01_0606 - 7949609-7949822,7949989-7950159,7950242-7951074,795...    28   8.5  
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339...    28   8.5  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 407 VIRKSRTVKYKETKKHEMNGEKSERIWGITPQNHGQTN 520
           +I K  T +Y  T   E+ GE   RIW  +P+NH  TN
Sbjct: 801 IISKPFTKEYSLTTV-ELCGENEARIWHASPKNHPVTN 837


>07_01_0752 -
           5783305-5783416,5783739-5783836,5784550-5784675,
           5784890-5785090,5785185-5785268,5785519-5785566,
           5785709-5785763,5786130-5786185,5786281-5786365,
           5786485-5786558,5787093-5787159,5788134-5788216
          Length = 362

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 209 KDKTMEKRWNEILKRGKPVTIYSKVCSLHFTQADYNITTMGQWKTLNKDAVPSQNLPKLN 388
           KD   E  W++ L    PV  Y  +    F+ + + +TT+G  + + +  V +     L 
Sbjct: 246 KDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTTVG--RAITRTMVKALEYVGLA 303

Query: 389 PDGSVMV 409
           P GS  V
Sbjct: 304 PQGSERV 310


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 618 GGEGSLARDVTYCILHERLISCSVHGSGKS 529
           GG GS+A  V++ +   R+  CS HG+G+S
Sbjct: 103 GGGGSVAGHVSWRLDPPRVCRCSGHGAGRS 132


>04_01_0606 -
           7949609-7949822,7949989-7950159,7950242-7951074,
           7951156-7951476,7951696-7952166
          Length = 669

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 380 KLNPDGSVMVIRKSRTVKYKETK 448
           K+NPDGSV    KS  V Y+E K
Sbjct: 136 KVNPDGSVTFKNKSDAVVYQELK 158


>03_06_0641 -
           35232858-35232892,35233066-35233290,35233785-35233929,
           35234295-35234406,35234477-35234535,35234981-35235022,
           35235372-35235434,35235636-35235697,35236298-35236451,
           35236572-35236651,35237646-35237709,35237791-35237959,
           35238002-35238114,35238361-35238507
          Length = 489

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 19  KNKEIH-TYVTFYIIVSVLMCCVRVISVPIANNELLKSHGLLLYGTTMYIFT 171
           K KE+  T  T  ++     CC+  IS  + N  L+    LL  GTT  +++
Sbjct: 350 KLKELQGTVATTLVVTGTSQCCIIGISSMLHNWNLMCQSSLLSMGTTAVMYS 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,101
Number of Sequences: 37544
Number of extensions: 457480
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)