Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C19
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 1.0
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 27 4.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 4.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 5.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 7.4
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 9.8
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 9.8
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.8
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 9.8
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 538 PEESVFRECLLERCSVEENKIISGLETSXENMR 636
P ES F E +L C+V + K++S L T ++ R
Sbjct: 232 PSESEFSERMLAFCAVHQRKLLSMLGTMLQSSR 264
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 4.2
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Frame = +1
Query: 265 LDDMSYSLE--EAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYT 438
LD +S LE EN D+ + L+ + + DP ++L L+DS L +
Sbjct: 144 LDCVSTFLELMNHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIK 203
Query: 439 RPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQ--PEESVFRECLLERCSVEENKIISGL 612
R ++ G L S+ +S+ E + E LL R SV+E I + L
Sbjct: 204 R-FDESNEEDRHGVYCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVDETSISTNL 262
Query: 613 ETSXE 627
+ + E
Sbjct: 263 QYAVE 267
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 259 YNLDDMSYSLEEAENMDLRENI 324
Y++ D SYS+ E + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 680 PQAEYKSRARNIANPRIFSXEVSKPLIILFSSTEQRSSRHSRNTDSSGCATESYIEHKRA 501
P+++Y SR+ + + + S + P+ S RSSR SR+ S + Y ++ R+
Sbjct: 122 PRSDYGSRSPS-PHSSVDSHQSRSPVR---SRDRDRSSRSSRSRHPSSRSRHRYDDYSRS 177
Query: 500 PLY 492
P Y
Sbjct: 178 PPY 180
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 133 KEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMS 279
K +PA+Y+S A N + + + S+ G ++ + + P NL S
Sbjct: 422 KSIFPASYSSSAEDGQNMQAPAHAYMQSSIYGVNQEQKSEYPSNLSMQS 470
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/83 (21%), Positives = 32/83 (38%)
Frame = +1
Query: 349 EITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDS 528
E+ F P P++ A + + Y RPL I+ + + + Y+ L + D
Sbjct: 388 EVEFHPLSICKKLQPIIKRLAESNDTAQYIRPLQQVILTRLFQQLSQVYDSISLKYVMDL 447
Query: 529 VAQPEESVFRECLLERCSVEENK 597
E F +E+ + NK
Sbjct: 448 ATFEEPYDFNPGQIEKFIMNGNK 470
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 268 DDMSYSLEEAENMDLRENIANLITVMCE 351
DD S+ + E+ +RE + I V+CE
Sbjct: 7 DDFSFEKRKTESQRIREKYPDRIPVICE 34
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 589 PQRNSARAGTRGIQTPQV 536
P + + RAGTRG + P+V
Sbjct: 282 PSKRANRAGTRGFRAPEV 299
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 583 RNSARAGTRGIQTPQVAP 530
R S RAGT+ + TP++ P
Sbjct: 60 RKSGRAGTKSLLTPELTP 77
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +1
Query: 37 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 216
Q +++A + R ++ + D S ++ A A+ P N S + + T+ + P
Sbjct: 225 QPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYTKQSGTAGVLP 284
Query: 217 SVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 309
+V + A NP D+S A+N D
Sbjct: 285 AVNADIDAANRMNP----DISSQFPIADNKD 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,843
Number of Sequences: 5004
Number of extensions: 68491
Number of successful extensions: 235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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