Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C17
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...   113   4e-26
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    30   0.48 
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   4.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   7.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   7.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.8  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   7.8  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score =  113 bits (271), Expect = 4e-26
 Identities = 50/113 (44%), Positives = 78/113 (69%)
 Frame = +1

Query: 304 ERRPYLASECNDLPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDEINKLMREKRH 483
           E+RP        +P  EK R  +V++I++K+++IQ+A L E++IRDLND IN+LMREK  
Sbjct: 14  EKRPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHE 73

Query: 484 WEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFGAAXDLPGVRELFEQE 642
           WEVQI+ LGG ++     K+ + +G+++     Y+Y+G A +LPGV+ELFE +
Sbjct: 74  WEVQIRDLGGINYLYNKAKLFEDEGEQISDIDDYRYYGRARELPGVKELFEAD 126


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 181 LIPKTE-IVNTMS*TMARN-AEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAE 354
           LIP  E I  T +    R  A  A+TTL +  AAQ  +A    E++  L S C +L +A 
Sbjct: 299 LIPDVERIAQTAAMPEVRALASHALTTLNKAAAAQAAKAANNSEKQA-LDSACKELREAV 357

Query: 355 KWRLQIVREIAKKV 396
                +  E+A  +
Sbjct: 358 LKNTSVPHELANSI 371


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 36  SFFKMFSLMELKFIXQRIYC 95
           SF K F+L +L F  QR+YC
Sbjct: 266 SFEKEFALADLAFRHQRVYC 285


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 220 FNSLYLQFRFLGSRPVQISIKL 155
           FN L L+F+ L S+P ++S KL
Sbjct: 470 FNRLELEFKHLRSKPKEVSPKL 491


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 609 ILCSSKVFVSPVARHFFPVLVQHFRTDSSMIGTAQRFNLNLPMSLL 472
           ++  S+VF   + +HF+ + +Q FR   +++     F  ++P + L
Sbjct: 193 LIAKSRVFFGQLMKHFYCLQLQMFRKMHNIVRPWDCFQDDIPQTWL 238


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 192 NRNCKYNELNHGQKRRESNDNTSTLACGTS 281
           NR+  YNELN  +K +E+N   S L+  TS
Sbjct: 3   NRDA-YNELNLNKKSQETNRKPSPLSSYTS 31


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 418 LGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGP 537
           LG++ I  +  E+ + + +K  W+ +       DH+R GP
Sbjct: 367 LGKYSIGCMFRELEEPLLKKWRWKKENLEFAALDHSRAGP 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,952
Number of Sequences: 5004
Number of extensions: 55223
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)