Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C16
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 31 0.89
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 29 3.6
04_04_0339 - 24513699-24516827 29 6.2
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 6.2
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 29 6.2
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 29 6.2
09_06_0216 + 21627238-21627834 28 8.3
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 28 8.3
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 8.3
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 PHPTRGRSARPYSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILI- 187
PHP RGR P +P APA G + G+ + + R H + +I +
Sbjct: 140 PHPARGRGVHP---RQPIAVAPAARHGAGCLLGVTSNGNTALHLVASRGHAELAALIRVR 196
Query: 188 AFSLLVTSRQYIGDPIDC 241
A SL+ T + + P+ C
Sbjct: 197 APSLVATRNRCLDTPLHC 214
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 427 ILSSNPVLCSPATCGKRGKEAASRCWSWILTV-PSLKTSASRVVKSYLSTISTRTCTLKT 603
+LSS + + C G A + + ++ PSL+ S R++ S L ++ R CT+
Sbjct: 981 MLSSVGITSCRSLCSVAGLGAIASLEKFAISFCPSLELSDRRILPSQLKEVTVRGCTIHD 1040
Query: 604 FTLSDSL 624
L D L
Sbjct: 1041 GFLHDDL 1047
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 502 WSWILTV-PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WV 660
W ++ V S K+ + +V S + + T T +L+ +TL L + S L T W+
Sbjct: 272 WKLLIEVLESAKSGSKMIVTSRVPDVVTMTNSLRPYTLKRLLPIDSSNLLTQWM 325
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 391 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 233
+ FVLS + AD L V + D SVR G+ R+Y A+ +NG +N N
Sbjct: 33 WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 388 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 290
N LSFD W D LH+++ D R+ SRV
Sbjct: 12 NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 11 PHPTRGRSARPYSRPRPTRRAPAMFDV--FGSVKGLLKLDSVCIDNNVFRLHYKA 169
P P+ G+ +P SRP PT A+F+V FG+ KG D V D F + A
Sbjct: 115 PTPSCGKGNQPPSRPTPTSPQGAVFNVVDFGA-KG----DGVSDDTKAFEAAWAA 164
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 514 LTVPSLKTSASRVVKSYLSTISTRTCTLKT 603
LTVPS+ T + V SY++T +T T T T
Sbjct: 160 LTVPSVDTYNTSTVTSYVATDNTSTITSST 189
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 451 CSPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKS 561
C+PA G+ +AAS WS + V ++K + R + S
Sbjct: 292 CTPARHGQVPDQAASASWSSLKRVTNVKQTPRRTIPS 328
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 270 WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCF 449
W+ Y L + +L A +RI HM + LN+T I FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265
Query: 450 MFP 458
+ P
Sbjct: 1266 LPP 1268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,768,314
Number of Sequences: 37544
Number of extensions: 464275
Number of successful extensions: 1390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -