Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C16
(855 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF415306-1|ABO26887.1| 43|Homo sapiens T cell receptor beta ch... 31 4.0
BC113427-1|AAI13428.1| 1048|Homo sapiens zinc finger protein 217... 31 4.0
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 31 4.0
AL691442-9|CAI15324.1| 166|Homo sapiens recombination activatin... 31 4.0
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 31 4.0
AL691442-6|CAI15321.1| 156|Homo sapiens recombination activatin... 31 4.0
AL157838-2|CAC08433.1| 1048|Homo sapiens zinc finger protein 217... 31 4.0
AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein is... 31 4.0
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 31 4.0
AF041259-1|AAC39895.1| 1048|Homo sapiens breast cancer putative ... 31 4.0
>EF415306-1|ABO26887.1| 43|Homo sapiens T cell receptor beta chain
protein.
Length = 43
Score = 31.5 bits (68), Expect = 4.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 602 LLRFPILYM*SSQLYQRSGSIFFMDSFW 685
LL LY+ +S LY RSG +FF + +W
Sbjct: 10 LLGDSALYLCASSLYSRSGELFFGEGYW 37
>BC113427-1|AAI13428.1| 1048|Homo sapiens zinc finger protein 217
protein.
Length = 1048
Score = 31.5 bits (68), Expect = 4.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 FRTRHEDVAHVRTHDRDRRA-ARPPCLTFSAP*RGFSSSTLCA 134
FRT H+ V H R H +DRRA A P ++ G S L A
Sbjct: 384 FRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTCSPDLAA 426
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174
>AL691442-9|CAI15324.1| 166|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 166
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 69 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 119
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174
>AL691442-6|CAI15321.1| 156|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 156
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 59 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 109
>AL157838-2|CAC08433.1| 1048|Homo sapiens zinc finger protein 217
protein.
Length = 1048
Score = 31.5 bits (68), Expect = 4.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 FRTRHEDVAHVRTHDRDRRA-ARPPCLTFSAP*RGFSSSTLCA 134
FRT H+ V H R H +DRRA A P ++ G S L A
Sbjct: 384 FRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTCSPDLAA 426
>AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein
isoform protein.
Length = 179
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 82 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 132
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 394 SQILSVGLFCVILSSNPVLCSPATCGKRGKEAASRCWSWILTVPSLKTSAS 546
+++ +GLFC + + + L A K + +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174
>AF041259-1|AAC39895.1| 1048|Homo sapiens breast cancer putative
transcription factor protein.
Length = 1048
Score = 31.5 bits (68), Expect = 4.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 FRTRHEDVAHVRTHDRDRRA-ARPPCLTFSAP*RGFSSSTLCA 134
FRT H+ V H R H +DRRA A P ++ G S L A
Sbjct: 384 FRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTCSPDLAA 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,359,459
Number of Sequences: 237096
Number of extensions: 2595980
Number of successful extensions: 11330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11328
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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