Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C14
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.9  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   7.9  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 338 PPADTQHTVHATTTPRVASMSTRFYRTRVRLRTVIATNTNT--KCNHATNTSFI 183
           PP  T H    TT P   SM+T    T V   T + T T T     H  +T+ +
Sbjct: 71  PPPSTSHNSTTTTVPPTTSMNT---TTTVPPTTSLNTTTTTAPPTTHVNSTTTV 121


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +3

Query: 42  IALCTATCVTSRLFRF*QSFKVFLFVSHYHGVQCDATIVVSAQFVVINKGSVRRVI 209
           + +C  T +  RL+   +  K+F + SH +G +    +   A F + + G +R ++
Sbjct: 217 LKVCLETVIDQRLYTAQERSKMFEYFSHNYG-RTALCLSGGASFAIYHTGVLRALL 271


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +2

Query: 11  LLSGREDASRDRSLYCHVRDIATISILTKL*SVPVRFALSRSSVRRNDCCQCPVCS 178
           LL+     S   S+    R  A  +I       P+ F    S+     CC  P+CS
Sbjct: 119 LLTRNRSNSTPGSISADYRTTAITTIYANAMECPICFLYYPSNFNYTRCCAQPICS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,448
Number of Sequences: 5004
Number of extensions: 51288
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)