Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C14
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    35   0.096
06_03_0524 - 21737090-21737126,21737155-21737318,21737402-217374...    29   3.6  
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    28   8.3  

>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 630 ISEKRVSSRVFWNDLELLAIRDGRVAKLPLCGQTTTLQEASHDRPVHERYPF 475
           I+EK       W DLEL  + D  +   P  G++T L   S  +P    YPF
Sbjct: 433 IAEKGEKGPEMWIDLELKLVADVGIVGAPNAGKSTLLTAISAAKPTIANYPF 484


>06_03_0524 -
           21737090-21737126,21737155-21737318,21737402-21737463,
           21737939-21737980,21738084-21738393
          Length = 204

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 669 RWPCRDTAR-MPLXPSCAPRMSRTRLSXC-CG 758
           R+PCRDT + +P   +  PRM R R     CG
Sbjct: 85  RYPCRDTGKWLPAAAAAVPRMIRCRFDPSRCG 116


>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 414 RTERRKIEAEAGGTAARNRERLGVRAA 334
           ++ RR+ EA A   AAR R RLGV  A
Sbjct: 114 KSSRRREEAAAAPEAARGRARLGVSVA 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,758,478
Number of Sequences: 37544
Number of extensions: 427308
Number of successful extensions: 1481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)