Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C14
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 30 1.8
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 30 1.8
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 28 9.8
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 463 DLQQKWVPLVYGPVVGRFLERGRLPAQWKFRDATVPNCKELQIIPEHAAAYALLRNDGSL 642
D + W P YG + ++ R ++ W + T+ +C E+++ YA L ++GS+
Sbjct: 115 DTRLSWDPEDYGGINHIYVPRSKV---W-IPETTIVDCSEIKVFDNEYTRYAWLHSNGSI 170
Query: 643 MM 648
M
Sbjct: 171 GM 172
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 583 APCNSGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAEDQSGAHRPRAQRR 428
+P S R RRE S+ R P +P + + I GA+ P A+ R
Sbjct: 120 SPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYIPPAKLR 171
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 583 APCNSGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAEDQSGAHRPRAQRR 428
+P S R RRE S+ R P +P + + I GA+ P A+ R
Sbjct: 120 SPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYIPPAKLR 171
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 580 PCNSGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAEDQSGAHRPRAQRRG*SRAH*AP 401
P GRS+ + + + RS R P + HR R+Q R SR++
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRS 223
Query: 400 QDRG*GRRDSS 368
+ R GR S+
Sbjct: 224 RSRSSGRSGSA 234
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 580 PCNSGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAEDQSGAHRPRAQRRG*SRAH*AP 401
P GRS+ + + + RS R P + HR R+Q R SR++
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRS 223
Query: 400 QDRG*GRRDSS 368
+ R GR S+
Sbjct: 224 RSRSSGRSGSA 234
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 203 ATNTSFINYYKLGTDNNRCVALNSVIMRNEQEHFKALLKS 84
AT+ ++ +++GTDNN C+ S++ N + A L S
Sbjct: 223 ATSGDYLRLWRIGTDNNACI--ESLLNTNRTAEYCAPLTS 260
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 571 SGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAE 467
SGRSR+ S R + RS P+R R P+ E
Sbjct: 752 SGRSRQSRSFTRTTEFETRSSTLPSRHRTAPVDIE 786
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 571 SGRSRRETSTVRANDHAPRSVPRPARTRAVPIFAE 467
SGRSR+ S R + RS P+R R P+ E
Sbjct: 752 SGRSRQSRSFTRTTEFETRSSTLPSRHRTAPVDIE 786
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 292 LGVVVAWTVCWVSAGGAHSQPLSIP 366
L V W + W SA A +QP S+P
Sbjct: 673 LAYVAPWQISWGSAFHAFAQPFSVP 697
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,101
Number of Sequences: 27780
Number of extensions: 318302
Number of successful extensions: 901
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -