Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C14
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 159 QQSLRRTELRDNAKRT 112
           QQ LRR ++R N +RT
Sbjct: 168 QQLLRRAQIRRNERRT 183


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 815 QQTWXXFKIQWPP 777
           +Q+W  +K++W P
Sbjct: 82  EQSWYDYKLRWEP 94


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 815 QQTWXXFKIQWPP 777
           +Q+W  +K++W P
Sbjct: 82  EQSWYDYKLRWEP 94


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 815 QQTWXXFKIQWPP 777
           +Q+W  +K++W P
Sbjct: 78  EQSWYDYKLKWDP 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 576 AIRDGRVAKLPLCGQTTTLQEASHDR 499
           A+R GRV K         +Q++SH R
Sbjct: 137 AVRFGRVPKREKARILAAMQQSSHSR 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,015
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)