Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C10
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673...   136   3e-32
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    69   4e-12
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85...    30   2.9  
11_06_0690 + 26303733-26306540                                         29   6.7  

>03_05_0168 -
           21466431-21466445,21467053-21467160,21467222-21467365,
           21467778-21467846,21467928-21468071,21468409-21468565,
           21468671-21468767,21469015-21469297,21469382-21469507,
           21470098-21470178,21471990-21472072,21472393-21472478,
           21473329-21473422,21473516-21473681,21473777-21473851,
           21474082-21474157,21474259-21474347
          Length = 630

 Score =  136 bits (328), Expect = 3e-32
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 6/154 (3%)
 Frame = +1

Query: 196 KKPSKQEEEISPNEYYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNG 372
           K+ +  +EE+ P +YY+ R  A+ +LK  G+   +PYPHKF  +I++ ++IEKY+++N G
Sbjct: 68  KESAADDEEMDPTQYYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVG 124

Query: 373 DVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED-KFFKDTDKLR 549
           D L +VT  +AGR+ + R   +KL+FYDL   G K+QV A+A+  E ED +F K    L+
Sbjct: 125 DKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLK 184

Query: 550 RGDIIGCVGHPGKTKKGELSIIPKNI----NCLH 639
           RGDI+G  G+PGK+K+GELSI PK I     CLH
Sbjct: 185 RGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLH 218



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 612 YPEKYKLLAPCLHMLP 659
           +P+K  +L+PCLHM+P
Sbjct: 206 FPKKIVVLSPCLHMMP 221


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 42/113 (37%), Positives = 66/113 (58%)
 Frame = +1

Query: 298 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAK 477
           PY +K++ + + +E  + Y +L NG+V  +V +S+AGR+ + R  G KL+F  +R +   
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRDDSGT 180

Query: 478 IQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNINCL 636
           IQ+    K   TE++F +    +  GDIIG  G   KT+KGELS+  KN   L
Sbjct: 181 IQLYCE-KDSLTEEQFEQLKTIIDIGDIIGANGSIKKTEKGELSVYVKNFEIL 232


>03_01_0107 +
           849489-850652,850745-850835,850926-851083,851180-851231,
           852373-852452,852540-852633,852711-853231,854087-854202,
           854242-854293
          Length = 775

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 25  SCIFISILRLSELSPIAMAESSTEKISKNXXXXXXXXXXXXXXXXXXXSQQPV 183
           SC+F ++   SEL+P+  +E S  K  KN                   SQ+PV
Sbjct: 317 SCVFFTVNENSELAPVNSSEGSKSKHYKNSKVSTDPACVVIPHRTFALSQEPV 369


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 208  KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 387
            +Q +++ P  Y   RS  +AA KNG K  H       V +    FIE     + GDVL  
Sbjct: 847  RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903

Query: 388  VTL 396
            V L
Sbjct: 904  VEL 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,104
Number of Sequences: 37544
Number of extensions: 288475
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)