Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C09
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    55   1e-08
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    45   1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    33   0.062
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   7.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   9.5  

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
 Frame = +2

Query: 89   IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLKSKDIYRTEPDKIKFQQLRKLF 265
            IFG+PL ++V  S   +D+GLP+VV   I+YL++    K + IYR        + L++ F
Sbjct: 1062 IFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEKEEGIYRLSGSASTIKHLKEQF 1121

Query: 266  TDRGPTFPY-----HWDVPVACAMLKAFISELPESILTQELHGQFE 388
             + G  +        +DV V   +LK ++  LP ++L   +H  FE
Sbjct: 1122 NE-GVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFE 1166


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
 Frame = +2

Query: 92   FGVPLQQSVERSRCHDDTG-------LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 250
            FGVPL+  VER+      G       +P  + +++  ++   +    ++R   +  + ++
Sbjct: 835  FGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLKE 894

Query: 251  LRKLFTDRGPTFPYHWDVPV-ACAMLKAFISELPESILTQELHGQFEQATAI-AEPQREA 424
            L  +      +  Y  + P+   A+LK F+ ELP+ +LT +L G F  ++ + +E +R  
Sbjct: 895  LSDMLDVSPDSIDYEQETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMR 954

Query: 425  TMTNLIXXLP 454
             +   I  LP
Sbjct: 955  VLHLTICLLP 964


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +2

Query: 110  QSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFP 289
            +S+E     + + LP V+   +  + AHGL+ + IYR      + + L   F +      
Sbjct: 780  RSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVDEFENGSIRME 839

Query: 290  YHWDVPVAC-AMLKAFISELPESILTQELHGQFEQATAIAEPQRE 421
            +      AC ++LK ++  LPE ++    + +  +A  I + + +
Sbjct: 840  HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEK 884


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 137 DDTGLPLVVR-DSIDYLQAHGLKSKDI--YRTEPDKIKFQQL 253
           +DT LP   +   +DY +A  + +K+I  +R   DK+KFQQL
Sbjct: 86  EDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQL 127


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 197 LKSKDIYRTEPDKIKFQQLRK---LFTDRGPTFPYHWDVPVACAM---LKAFISELPESI 358
           L  +D+YRT PD + F+   K     +D         DVP+   +   L  F + LPE+ 
Sbjct: 344 LIERDLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYLPENG 403

Query: 359 LTQELH 376
             Q L+
Sbjct: 404 YCQSLN 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,202
Number of Sequences: 5004
Number of extensions: 43571
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)