Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C08
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   252   2e-67
07_01_0578 + 4295386-4296489,4297394-4297507                          250   1e-66
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61...    34   0.17 
10_02_0199 + 6668902-6669293,6669825-6669882                           34   0.17 
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    33   0.22 
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988     33   0.29 
08_02_1278 - 25838146-25839411                                         32   0.67 
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57...    31   0.89 
03_05_0366 - 23505755-23506441                                         31   1.2  
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    30   2.0  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     30   2.7  
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496...    29   3.6  
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067           29   6.2  
04_01_0588 + 7657510-7657992,7658397-7658843                           29   6.2  
03_05_0452 + 24464134-24464442                                         29   6.2  
02_04_0457 + 23093020-23093343,23093798-23093806                       29   6.2  
10_07_0029 + 12031711-12032464,12044289-12044386                       28   8.3  
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036...    28   8.3  

>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  252 bits (618), Expect = 2e-67
 Identities = 125/229 (54%), Positives = 152/229 (66%), Gaps = 2/229 (0%)
 Frame = +1

Query: 67  SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 243
           + ARPLVSV + E       A   +P V +APIRPD+V   H  +S N RQPY VS+ AG
Sbjct: 3   AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62

Query: 244 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 423
           HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH       
Sbjct: 63  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122

Query: 424 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 603
                              ARGH IE +PE PLVV+D ++ I KT Q++  L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182

Query: 604 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGV 747
             K   S  +RAGKGKMRNRR I RKGPLI++  +   + +AFRN+PGV
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGV 231


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  250 bits (612), Expect = 1e-66
 Identities = 123/227 (54%), Positives = 153/227 (67%), Gaps = 3/227 (1%)
 Frame = +1

Query: 76  RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 249
           RPLVSV + + +  T   ++  L  VF+AP+RPD+V  VH  +S N RQPY VS+ AGHQ
Sbjct: 6   RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65

Query: 250 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 429
           TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH         
Sbjct: 66  TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125

Query: 430 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 609
                            ARGH IE +PELPLV++D  + I KT QA+  L+++ A++D  
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185

Query: 610 KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGV 747
           K   S  +R GKGKMRNRR I RKGPLI++  +   + +AFRN+PGV
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGV 232


>12_01_0073 +
           613316-613447,613611-613802,614067-614232,614460-614845
          Length = 291

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +3

Query: 3   WITAISVYFGGIASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ* 182
           W+  +       ASL   N  I +PTF +G   +     G S    + + GAHT G  + 
Sbjct: 114 WVVQLGRRDSTTASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR- 172

Query: 183 CSRF 194
           C  F
Sbjct: 173 CVNF 176


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 256 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 366
           A+SW TGRA A + R R GG  R    A  N   G R
Sbjct: 36  AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 362 PPRHMLPKAP*PDLWVPPP 306
           PPRH++P+ P P  WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325


>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
          Length = 292

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +3

Query: 39  ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 194
           ASL   N  +  P+F V          G SQA  V + GAHT G  Q C  F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175


>08_02_1278 - 25838146-25839411
          Length = 421

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 585 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 478
           A +E   LF L+D+LD V   +G+L  LF+  S++L
Sbjct: 89  AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124


>11_01_0072 +
           570345-570476,570640-570831,571095-571260,571487-571872
          Length = 291

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +3

Query: 3   WITAISVYFGGIASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ* 182
           W+  +       ASL   N  I +PT  +G   +     G S    + + GAHT G  + 
Sbjct: 114 WVVQLGRRDSTTASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR- 172

Query: 183 CSRF 194
           C  F
Sbjct: 173 CVNF 176


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 142 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 318
           ++  AP   D   +V  S +   R  P C S E   + +AES  TG A  R  R+  G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167

Query: 319 HRSGQGA 339
           + + + A
Sbjct: 168 NDNDEEA 174


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 576 EDDSLFGLVDLLDFVGYN--QGKLGNLFNNVSSSLNERWDASSSNGCCQGR 430
           +DD +F  V LLD VGYN     +G++  N   SL + W  S    CCQG+
Sbjct: 331 DDDVVFLHVKLLDLVGYNFISRTVGSILIN---SLLDAWH-SCVYICCQGK 377


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 31/89 (34%), Positives = 39/89 (43%)
 Frame = -1

Query: 645  LTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSLNERW 466
            L S  TLR VHL      +   QE + L  L  L   VG N+ K G  F +  S L++  
Sbjct: 947  LKSLHTLRHVHLAWGNTVI---QEIERLTQLRKL-GVVGINK-KNGPSFYSAISKLSQLE 1001

Query: 465  DASSSNGCCQGRSPLSEVDATVPAPPGLR 379
              S   G CQG    S   +T P P  L+
Sbjct: 1002 SLSVCAGWCQGLHGTSSSSSTSPPPENLQ 1030


>08_02_0105 +
           12448808-12449152,12449218-12449409,12449520-12449685,
           12449771-12450201
          Length = 377

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 39  ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 194
           ASL+  N ++ +PT  V    ++    G S    V + GAHT G  + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247


>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
          Length = 472

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = -1

Query: 699 EDYEGSLTL--DTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDD 568
           ED +GS+ +  DTT++ + +L++ ++L LV +K ++P L    E+D
Sbjct: 236 EDCKGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEED 281


>04_01_0588 + 7657510-7657992,7658397-7658843
          Length = 309

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
 Frame = +1

Query: 178 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 348
           +D+    ++ SR    +   +  ++S+  W  G    R+  +    GGG  R      G 
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260

Query: 349 MCRGGRMFAPTKPWRRW 399
                    P  PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277


>03_05_0452 + 24464134-24464442
          Length = 102

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 198 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 299
           V+++ ++LLR  G     Q  ++G R C C NSA
Sbjct: 21  VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54


>02_04_0457 + 23093020-23093343,23093798-23093806
          Length = 110

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 241 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 345
           G + S   W  G A A    VRGGG  RSG G  G
Sbjct: 76  GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109


>10_07_0029 + 12031711-12032464,12044289-12044386
          Length = 283

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 367 YVHHDTCYRRHPDRTYG 317
           Y+ HDT YR HP R  G
Sbjct: 94  YIFHDTAYRYHPRRANG 110


>07_03_1387 +
           26202975-26203274,26203363-26203449,26203541-26203648,
           26203708-26203980,26205242-26205355,26205900-26206268
          Length = 416

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 395 AGTVASTSDSGERPWQQPLLLLASQRSFRLEDTLLKRFPSFPWL*PTKSRRSTRPNRLSS 574
           A   AST+  G RPW      ++++R       +  R P+  W    + RR+ R + +++
Sbjct: 8   AAAAASTARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWPAAARRRRAPRRHAVAA 67

Query: 575 S*GAS 589
             GA+
Sbjct: 68  KAGAA 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,806,244
Number of Sequences: 37544
Number of extensions: 528696
Number of successful extensions: 1907
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)