Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C06
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    98   1e-21
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    43   5e-05
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    34   0.023
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.16 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    28   2.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   4.6  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   6.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   6.1  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   8.0  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.0  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
 Frame = +3

Query: 240 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 416
           + GL   ++A  +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+   +    +
Sbjct: 89  EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147

Query: 417 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 575
           M     Y IMFGPD CG   + VH IF +K        + HL  +         T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206

Query: 576 IVKPDNTYEVLIDNEKVESGDLXADWDFLPP 668
           IVKPD T+EV I+ + V  G L   +DF+PP
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLF--YDFIPP 235



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 780 PRCPXPENWDDXMDGXW 830
           P    PE+WDD  DG W
Sbjct: 300 PEAQKPEDWDDEEDGDW 316



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 731 PRRQKPEDWDKPE 769
           P  QKPEDWD  E
Sbjct: 300 PEAQKPEDWDDEE 312


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
 Frame = +3

Query: 120 FEEKFPDD---SWESNWVYSEHPXXXXXXXXXXXXXXXSDPEDDKGLKTSEDARFYAL-S 287
           F E+F  +   +W S W     P               S   D+ GL T +  + + L S
Sbjct: 33  FSEQFTSEDITTWRSRW---RAPVNKDLGVWDLVEAPGSHLRDEYGLITLKSNKPHILIS 89

Query: 288 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDI 461
               P + +    P+V+ F VK  +   CG  Y+ +   +   K++  E P  I FG   
Sbjct: 90  NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148

Query: 462 CGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 635
           CG        I SY GK   HL         +  T +YTL+++ + T  +  D   V +G
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTG 207

Query: 636 DLXADWDFLPPKKI 677
           D+  ++   P K I
Sbjct: 208 DVGTNFFHSPTKWI 221


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 274 NLASSEVFKPLSSSGSLKNFPAANLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 98
           N  SSE F   S+S SL   P  N +   S    + ++ L S + S+ NF+S ++S  + 
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531

Query: 97  DNASKLTTTSTT 62
           +  S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -1

Query: 211 AANLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDS 44
           ++N N    F      + + S  +SGNFS   T Q   DN S  +T     ST    F S
Sbjct: 573 SSNSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPS 632

Query: 43  QYHLLQQKTGHES 5
              LL  +T   S
Sbjct: 633 DRDLLSNQTRRSS 645


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 498 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES-GDLXADWDFLPPKK 674
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES      + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 675 IKDLK 689
           +K  K
Sbjct: 197 MKQKK 201


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 33/130 (25%), Positives = 56/130 (43%)
 Frame = -1

Query: 406 SSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGS 227
           +SL S      P  S S +  T   ++  +PS  + +     A  ++SS    PLSSS  
Sbjct: 12  TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSF 71

Query: 226 LKNFPAANLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTAFIFD 47
               PA++          S  T L+S  SS   SS +++     +++ LT++S+ +    
Sbjct: 72  TS--PASS----------SFITSLVS--SSSQQSSSSSASLTSSSSATLTSSSSASPTSS 117

Query: 46  SQYHLLQQKT 17
           S  H L   +
Sbjct: 118 SSSHALSSSS 127


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 37/155 (23%), Positives = 64/155 (41%)
 Frame = -1

Query: 466 PQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLR 287
           P  S   I S   SP  S  SS  S +      +S S    TV+ ++    S L   +  
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSS------KSSSSFSSTVSSSSSTSSSTLTSSSSS 389

Query: 286 ERA*NLASSEVFKPLSSSGSLKNFPAANLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQ 107
                 +SS     LSS  S  +  +++    ++F   S  ++  SH SS + SS ++  
Sbjct: 390 SSR-PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKP 448

Query: 106 FIEDNASKLTTTSTTAFIFDSQYHLLQQKTGHESS 2
            +  ++S L T+S+  +   + Y +  +     SS
Sbjct: 449 ILTASSSSLLTSSSHTYERSTVYVVTVETVSSGSS 483


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
 Frame = -1

Query: 475 VPGPQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGL 296
           +P    S P+  S   SP  S  SS  S         S S + ++   ++  +PS  + +
Sbjct: 518 IPSTSSSTPSS-SIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576

Query: 295 NLRERA*NLASSEVFKPLSSSGSLKNFPAANLNFPNSF-PGCSLYTQLLSHESSGNFSSK 119
           +    +   + S     +SSS +   F +A+ + P+S     S  + +LS  +    S  
Sbjct: 577 SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLM 636

Query: 118 NTSQFIEDNASKLTTTSTTAFIFDS 44
            +S  I   +S + ++S +     S
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISS 661


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 369 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 536
           G  +LKV +   E   M  ETP +I++   +   G+      +H     K +    KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673

Query: 537 R--CKDDVYTH 563
              CK+D + +
Sbjct: 674 LLFCKEDEFLY 684


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 381 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 560
           +K+F   + +K  +  +P+E+M  P +  P             K H  + ++R  +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204

Query: 561 HLYTLIVKP 587
           +L   ++KP
Sbjct: 205 YLLNFLLKP 213


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -3

Query: 491  YVYLLGSWTTDVRAEHNLIWS---LSVHVLLLQFAVKDLEVSASTVNVLFMFDSELDDQG 321
            Y+ L GS   D R++   +++     V++ LL      L ++  T + + +FDS+ +   
Sbjct: 779  YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838

Query: 320  FTLITERFELTGESIEPRIFR 258
                 +R    G++ E RI+R
Sbjct: 839  DLQAQDRAHRIGQTKEVRIYR 859


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 123 EEKFPDDSWESNWVYS 170
           EEKFPD +W  +W  S
Sbjct: 251 EEKFPDIAWRVSWSLS 266


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = -1

Query: 274 NLASSEVFKPLSSSGSLKNFPAANLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIED 95
           N ASS V    + S  + NF  +   F N  P  SL  Q L+  S+   S ++T  ++  
Sbjct: 106 NFASSSVTSAPTQSSHISNFTNSQKYFANDLPN-SLTDQPLAQPSA---SQRST--WLPC 159

Query: 94  NASKLTTTSTTAFIFDS 44
           +A+  T++ ++   FDS
Sbjct: 160 SAAVSTSSPSSDPFFDS 176


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/100 (20%), Positives = 48/100 (48%)
 Frame = -1

Query: 358 SCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAANLNFPNSFP 179
           +CS  T++ ++      ++  ++        +S  +   SSS +    P+++ +  +S P
Sbjct: 110 ACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSST----PSSSSSSSSSSP 165

Query: 178 GCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 59
             S      S +SS + SS + S     ++SK +++S+++
Sbjct: 166 SSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,889
Number of Sequences: 5004
Number of extensions: 79927
Number of successful extensions: 262
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)