Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_C06
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 248 5e-66
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 248 5e-66
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 99 4e-21
Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical p... 31 0.81
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.4
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 29 5.7
U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine rece... 28 7.5
Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical pr... 28 10.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 10.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 10.0
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 28 10.0
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 28 10.0
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 28 10.0
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 28 10.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 10.0
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 248 bits (606), Expect = 5e-66
Identities = 122/246 (49%), Positives = 155/246 (63%), Gaps = 3/246 (1%)
Frame = +3
Query: 102 INCDVFFEEKFPDDSWESNWVYSEHPXXXXXXXXXXXXXXXSDPEDDKGLKTSEDARFYA 281
++ +V+F+E+F D SWE WV S+H + D +G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKDDFGAFKLSAGKFFDVESRD-QGIQTSQDAKFYS 71
Query: 282 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 458
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 459 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 638
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 639 LXADWDFLPPKKIKDLKPRXRRLG*QAHY-XDPED-KNLRIGTNLNTXXPRCPXPENWDD 812
L DWD LP KKIKD + + Y D ED K + P PE+WDD
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250
Query: 813 XMDGXW 830
MDG W
Sbjct: 251 EMDGEW 256
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 248 bits (606), Expect = 5e-66
Identities = 122/246 (49%), Positives = 155/246 (63%), Gaps = 3/246 (1%)
Frame = +3
Query: 102 INCDVFFEEKFPDDSWESNWVYSEHPXXXXXXXXXXXXXXXSDPEDDKGLKTSEDARFYA 281
++ +V+F+E+F D SWE WV S+H + D +G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKDDFGAFKLSAGKFFDVESRD-QGIQTSQDAKFYS 71
Query: 282 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 458
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 459 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 638
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 639 LXADWDFLPPKKIKDLKPRXRRLG*QAHY-XDPED-KNLRIGTNLNTXXPRCPXPENWDD 812
L DWD LP KKIKD + + Y D ED K + P PE+WDD
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250
Query: 813 XMDGXW 830
MDG W
Sbjct: 251 EMDGEW 256
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 99.1 bits (236), Expect = 4e-21
Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Frame = +3
Query: 234 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 404
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 405 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 554
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 555 YTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD--FLPPKKI---KDLKP 692
THL+TL+VKP Y V +D + + G++ +D PPK+I DLKP
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKP 276
Score = 28.3 bits (60), Expect = 7.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 780 PRCPXPENWDDXMDGXW 830
P P++WD+ MDG W
Sbjct: 326 PEAKKPQDWDEDMDGSW 342
>Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical
protein M01B2.12 protein.
Length = 278
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 521 EVVLTLVTEDYVYLLGSWTTDVRAEHNLIWSLSVHVLLLQFAVKDLEVSASTVNVLF 351
E+ + +V+ D+ LL W+ +VRAE L ++ L F +D + S + L+
Sbjct: 36 EIRIQMVSADFGILLAEWSKEVRAEFTSAELLELYKKCLNFVKEDNKPSMVEITQLY 92
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 647
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 647
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 410 LLQFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 255
L + ++K+LE + L F S L D G + + E+T E IE RI G
Sbjct: 233 LQKLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283
>U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein212 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 620 LIVNEDFIGVVG---FHNQSVQMCVDIIFAADIFFDEVVLTLVTEDYVYLLGSWTT 462
LI+ ++GV FHNQ++ + II ++ FF +V+ + Y W T
Sbjct: 255 LIIPIIYVGVTSLLYFHNQAINNFIVIIVSSHGFFSTIVMICIHVPYREFTLRWLT 310
>Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical
protein C34C6.5a protein.
Length = 473
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 325 WSSSSLSNMNKTLTVEADTSRSLTANWSRRTCTERLHM--RLCSALTSVVQE 474
W SS L+ + T+ + T RS+ + S+ TCTE HM +C S +E
Sbjct: 15 WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HMGGTICCCCRSDAEE 65
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 654 DFLPPKKIKDLKPRXRRLG*QAHYXDPED---KNLRIGTN 764
D+LPPKK+ + R+ AH +P D ++ +GTN
Sbjct: 802 DYLPPKKVPKVDGPMRKFPWGAHTINPRDIPRESFWVGTN 841
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 654 DFLPPKKIKDLKPRXRRLG*QAHYXDPED---KNLRIGTN 764
D+LPPKK+ + R+ AH +P D ++ +GTN
Sbjct: 802 DYLPPKKVPKVDGPMRKFPWGAHTINPRDIPRESFWVGTN 841
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 638 PXGRLGLPSAQENQGPEAKXQKTGMTSPLXRPRRQKP 748
P G G+P NQG +A + GM P P + P
Sbjct: 191 PPGLKGMPGIPGNQGEDAGPGRQGMPGPTGPPGPRGP 227
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 340 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-ANLNFPNSFPGCSLY 164
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302
Query: 163 TQLLSHESSGNFSSKNTSQFIE 98
T + S +SS N +++ S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 340 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-ANLNFPNSFPGCSLY 164
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399
Query: 163 TQLLSHESSGNFSSKNTSQFIE 98
T + S +SS N +++ S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 340 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-ANLNFPNSFPGCSLY 164
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523
Query: 163 TQLLSHESSGNFSSKNTSQFIE 98
T + S +SS N +++ S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 654 DFLPPKKIKDLKPRXRRLG*QAHYXDPED---KNLRIGTN 764
D+LPPKK+ + R+ AH +P D ++ +GTN
Sbjct: 385 DYLPPKKVPKVDGPMRKFPWGAHTINPRDIPRESFWVGTN 424
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,793,254
Number of Sequences: 27780
Number of extensions: 467340
Number of successful extensions: 1403
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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