Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C04
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   1.5  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    28   2.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   8.0  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 389 ARNSVGETSLYHVRCSQDEDF 327
           A N + E  +Y+V CSQ EDF
Sbjct: 188 AVNDIQEDIMYYVECSQSEDF 208


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 456 PRKSRASQNLAPNRNRDILTRSGEKLSGRNESVSR*VLTRRGLSYSTY 313
           P K    QN+    N D+LT+  E  SG  E   R V  RRG+++  Y
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSGFQE--VRMVPGRRGIAFVEY 217


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 427 STEPESRHTDKIRRETQWAKRVCITLGAHKTRTFLFNLRSK 305
           S + E   +DK+ R      +VC T G + ++T+  NL++K
Sbjct: 175 SPKEEDEKSDKVPR----VDKVCFTCGVNCSQTWYHNLKNK 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,823
Number of Sequences: 5004
Number of extensions: 47348
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)