Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_C04
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585...    30   2.8  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    28   8.4  

>01_06_0958 -
           33357689-33357997,33358135-33358284,33358371-33358511,
           33359807-33360592
          Length = 461

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 518 NVANTNPSKSSASQNLPPDWKRHSLRISGEKLSGLCLRVI 637
           N  +++PS SS+    PP W+ H L        GL L  +
Sbjct: 26  NSTSSHPSSSSSLLTKPPQWREHLLLADSSSHVGLGLNTV 65


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +2

Query: 476 VTQQVGELTGLKPDNVANTNPSKSSASQNLPPDWKRHSLRISGEKLSGLCLRVILLDEPS 655
           + + + +   ++ D   + +PS     +N  P  K   +++  + + G   RV  L++ S
Sbjct: 395 LAEDIEKFLRIRSDPDLDKSPSPQVGKENQMPK-KPRGIKLKEKGIHGSARRVGGLEKAS 453

Query: 656 SQRRXDENDD 685
           SQR+  + DD
Sbjct: 454 SQRKRKKKDD 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,762
Number of Sequences: 37544
Number of extensions: 283867
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)