Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B18
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81464-2|CAB03859.1|  249|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81464-2|CAB03859.1|  249|Caenorhabditis elegans Hypothetical
           protein C08E8.3 protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 434 SNCAFLNIFSNLFNWDPAYITS 499
           +NC  ++IFS++FN +P + TS
Sbjct: 46  TNCGIISIFSSIFNLNPIHKTS 67


>Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical
           protein F54C8.6 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 401 GVFTG*SFRC-LSNCAFLNIFSNLFNWDPAYITSENIPNVATSLRRRMFI 547
           GV T  SF C   +  F  +F  L   DP Y+ SE +P V + L   MFI
Sbjct: 124 GVSTQPSFFCRYFSGPFSPLFDALCEPDP-YVLSEELPKVMSGLLDEMFI 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,946
Number of Sequences: 27780
Number of extensions: 368241
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)