Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B16
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      36   0.005
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.089
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    29   0.83 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.4  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    26   7.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 13/32 (40%), Positives = 25/32 (78%)
 Frame = +1

Query: 556 ERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 651
           E++EK S+I++N+ + I++ GN+ G +RK H+
Sbjct: 90  EKEEKQSNIIYNSCIYITENGNLGGVYRKVHL 121


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -2

Query: 502 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 323
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 322 LTGR 311
           L GR
Sbjct: 290 LFGR 293


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 565 EKHSDILWNTAVVISDTGNVIGKHRKNHI 651
           E+    L+NTA+V   +G +I  HRK H+
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHL 157


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 571 HSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFTNP 678
           ++D   N A ++    +V  +HR+N +P V +  NP
Sbjct: 343 NNDYYDNAARILKQMFHVAERHRRNRVPSVQEVLNP 378


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 29/116 (25%), Positives = 48/116 (41%)
 Frame = -1

Query: 455 RLLLPCAEREGHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYS 276
           R LL C +R    P +L   DV      ++DD + F+          T  GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163

Query: 275 YLHNSRGSGLLVLGRESVCGDVEVSLLSCSDRGFFQFXFKVIPPPKMNSVELFQVA 108
           + H+S      V+         E + L   DR       K++  P  N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 353 DFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSL 198
           +FI+ CF    + +  GH D +++ S   +S GS    +G  S   D++VSL
Sbjct: 661 EFIQRCFHFADEASPDGHSDTLIDISDHMSSTGSENRSVGANS---DIKVSL 709


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 809 SXPFCPEHHPVQDVVPS 759
           S P+CPEHH ++  +PS
Sbjct: 129 SNPYCPEHHSIR-TLPS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,698
Number of Sequences: 5004
Number of extensions: 68855
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)