Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B15
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.85 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   2.0  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   2.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   6.0  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   7.9  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 533 HYRPSASTFEAIFN*IDLVVQ*LMPFTARPKIAGLIPASGKRLCHDQLSLLI 688
           HY P A+ F+ + + ID+  +   PF    ++ G++PA+ K    ++L  L+
Sbjct: 642 HYAPFAADFKDLAS-IDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLM 692


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 628  SRFDTSIRKTFVS*PTFFAHCL 693
            S+F T+++K  +  P +FAHCL
Sbjct: 1043 SKFTTNLQKEVIISPHYFAHCL 1064


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +1

Query: 235 SNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXX----GVRSTRWPTNYWTRVLVPL 402
           SN   K    EL  P+T+T +Q                   G    + P+ Y     +PL
Sbjct: 17  SNTTSKSIFNELRCPVTLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTTLPL 76

Query: 403 AIAKLLTTLCSQVSIWKVPVSYAHT 477
           +I ++   +   ++  K+PVS  HT
Sbjct: 77  SIFQIGGHVFGSLATTKIPVSTVHT 101


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 348 STFDAMA-DELLDPCLSTLGDRQTSYHTVLASFHLESASLLCPHRFVCCTVVTITLTENS 524
           STFDA+  D ++   L++L       +  L S  LE  +    H     +VV+ TLTEN+
Sbjct: 718 STFDAIPMDSIVSNILASLEKSVHKNYESLRSQLLEYKAANEKHTEAILSVVSSTLTENT 777

Query: 525 YSFIIDLQHQPLKLFL 572
              +  +  + +++ L
Sbjct: 778 GKILESVVEKSMQVAL 793


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 563 LQRLMLKVYN-EGI*VFRQCNGHNCTTNKPVWA*ETGTFQM 444
           L   ++K++N EG+  F + NG NC    P  A +  TF M
Sbjct: 59  LTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNM 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,835
Number of Sequences: 5004
Number of extensions: 70140
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)