Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B15
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   7.4  
Z69885-3|CAA93755.1|  278|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -3

Query: 238 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 155
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 416 FLPHCARKFPFGKCQSPMPTQVCLLYSCDHYTDGKL 523
           F PHCA      KC +P+   + ++Y    + D K+
Sbjct: 788 FSPHCANYLVLKKCATPLAFPLSIIYK-QSFADSKI 822


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 374 FVGHRVERTPHRASAGTLSEAAAHSC 297
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


>Z69885-3|CAA93755.1|  278|Caenorhabditis elegans Hypothetical
           protein T04C10.3 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 384 PCLSTLGDRQTSYHTVLASFHLESASLLCPHRFVCCTVVTITLTENSY 527
           PCL+++    T++H          ASL  P  F CC  +   + ENSY
Sbjct: 2   PCLNSMLKISTTFH----------ASLKLPETFHCCFFLIFIMIENSY 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,332
Number of Sequences: 27780
Number of extensions: 396108
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)