Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B14
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 33 0.068
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.068
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.16
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.21
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.48
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.83
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 29 1.1
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 1.5
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 28 1.5
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 1.9
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 2.5
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 2.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.5
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 27 2.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.4
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 3.4
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 4.4
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 4.4
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 4.4
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 5.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 5.9
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 7.8
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 26 7.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 7.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 7.8
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 32.7 bits (71), Expect = 0.068
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYT 137
+ F DGKY T T+D ++K+WD T ++ ++
Sbjct: 366 IAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.068
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 264 IVLGTTNGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNI 440
++ G NG +++YS + V KH + AL S K L S + D VY W++
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDL 261
Query: 441 EDGSVKQTYN 470
G TYN
Sbjct: 262 NTGDAISTYN 271
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTETNVLKQEY 134
+ F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 89 IAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 273 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGS 452
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 453 VKQTY 467
VK++Y
Sbjct: 140 VKRSY 144
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 140
L DG+Y T D LK+WD T L YTP
Sbjct: 271 LAVNRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 29.1 bits (62), Expect = 0.83
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 30 QKLCFPEDGKYYSTITKDGRLKIWD 104
+ + F DGKY +T +D +++IWD
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWD 362
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 12 GSNETWQKLCFPEDGKYYSTITKDGRLKIWDTE--TNVLKQEY 134
G E+ + F DGKY + + D +K+W+ + +NV Y
Sbjct: 456 GHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMY 498
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 39 CFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 149
CFP Y +++ DG +K W N + EY + H
Sbjct: 53 CFPTKSNYILSVSYDGYVKFWHKTPNGV--EYIKEFH 87
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTE 110
L F +DG+ + + + D +K+WDTE
Sbjct: 316 LSFSQDGRSFLSTSFDKTIKLWDTE 340
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 48 EDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 179
E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 69 ESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTETN 116
L F DG+Y ++++D L++W E++
Sbjct: 200 LKFSSDGRYLCSVSEDRTLRLWSIESS 226
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 267 VLGTTNGKLLIYSISQAKIINVWVPAKHFSA 359
++G+ G L +Y+I ++ ++VW F A
Sbjct: 481 LIGSRTGSLALYNIGESNYLSVWRRIHEFDA 511
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 18 NETWQKLCFPEDGKYYSTITKDGRLKIWDTETN 116
+E W C DG+ + + DGR+ +WD ++
Sbjct: 104 SECWSS-CISPDGQTIAFTSVDGRIAVWDNPSD 135
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 22 KHGRSYVFRKTGNTIRQLLKM----ADLRYGIRRPTYSNR 129
+ S+ F +T N RQ M +D YGIRRP Y+++
Sbjct: 369 RDANSHAFEQTANGKRQFRFMTRGPSDPWYGIRRPNYNSQ 408
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = +3
Query: 45 PEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTT 185
P + +S+ + DG +IWD T + H L W T
Sbjct: 301 PSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNT 347
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 6 QFGSNETWQKLCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPD 143
+F +++ K +P D Y T + DG + IWD + N++ + P+
Sbjct: 234 EFTAHKKRVKSVYPVDD-YLITASSDGSVCIWDKDWNLVIEHNIPE 278
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 45 PEDGKYYSTITKDGRLKIWDTET 113
PED + + KDGR +W+ ET
Sbjct: 270 PEDPTFLLSSGKDGRAMVWNVET 292
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 363 VTALDWSRKYGLYSCTKDSRVYEWN 437
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 6 QFGSNE--TWQKLCFPEDGKYYSTITKDGRLKIWDTETNV 119
Q G E T LCF + + T D +K+WD E N+
Sbjct: 293 QVGEKEYSTISDLCFSKGNLFLYTGAFDNAVKVWDMEGNL 332
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 42 FPEDGKYYSTITKDGRLKIWDTETNVLKQEYT 137
FP D +++ + D LK+WD T L++ YT
Sbjct: 112 FPFDNGIFTSSSFDHTLKVWDVST--LQEAYT 141
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 633 YSTSQTAILSLVSFNDTYYIVEGSENERLLSFW 731
Y+TS T++++ DT +V+G E+ + W
Sbjct: 405 YTTSNTSVVNAFEPYDTIDLVDGGEDRENIPLW 437
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 633 YSTSQTAILSLVSFNDTYYIVEGSENERLLSFW 731
Y+TS T++++ DT +V+G E+ + W
Sbjct: 405 YTTSNTSVVNAFEPYDTIDLVDGGEDRENIPLW 437
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 191
L + DG + + +G ++IW+ +T + +Y H +C+ W+ ++
Sbjct: 207 LAYSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMAWSPIN 256
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 39 CFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPP 164
C + +T + D +++W+ + +VL ++ + L SPP
Sbjct: 379 CLAIQDSFIATGSMDTTVRLWNLDNDVLHKDNPVEESLNSPP 420
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 354 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 449
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/60 (18%), Positives = 31/60 (51%)
Frame = +3
Query: 267 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 446
++ + N + + KI+ ++ K+ +V + + ++S ++D +VY W++E+
Sbjct: 196 LISSLNSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLEN 255
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 558 LVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIVE 698
LV +LS W L KD I +LG++ Q A L+ V T +I E
Sbjct: 132 LVNVINRLSQWSLRYKD---IPTLGFTHYQPAQLTTVGKRATLWIQE 175
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWD 104
L F +DG Y + +D L++WD
Sbjct: 304 LSFSQDGNYLLSRGEDNALRVWD 326
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWDTETNVLKQEY 134
+C +D KY T + +WD E N + ++Y
Sbjct: 389 ICLSKDSKYALTNLEPHTTFLWDLEENRIVRQY 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,228
Number of Sequences: 5004
Number of extensions: 72424
Number of successful extensions: 291
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -