Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B14
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 34 0.15
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 31 0.78
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 31 0.78
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 31 0.78
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 31 1.4
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 31 1.4
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical pr... 29 3.2
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ... 29 4.2
AJ133597-1|CAC35530.1| 684|Caenorhabditis elegans soluble guany... 29 5.5
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 5.5
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 28 7.3
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 28 7.3
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 28 7.3
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 28 7.3
AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical... 28 7.3
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 28 7.3
U80029-14|AAB37593.2| 213|Caenorhabditis elegans Hypothetical p... 28 9.6
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 28 9.6
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 12 GSNETWQKLCFPEDGKYYSTITKDGRLKIWDTET-----NVLKQEYTPDLHLTSPP 164
G + +CF DG Y ++ + DG ++IWD+ T ++ +E+ P H+ P
Sbjct: 230 GHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP 285
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 33.9 bits (74), Expect = 0.15
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Frame = +3
Query: 30 QKLCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNL 209
+++ F +G + + + D +K+WDTET +KQ + H P CL++
Sbjct: 323 REVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRF----HTGHVPYCLKY---------- 368
Query: 210 KGXXXXXXXXXXXXXXQCIVLGTTNGKLLIYSISQAKIINVWVPAKHFSA--KVTALDWS 383
++G N K++ + +I+ + +H A +T D +
Sbjct: 369 ---------HPDDDKNHMFLVGMQNKKIIQWDSRSGEIVQEY--DRHLQAVNSITFFDKN 417
Query: 384 RKYGLYSCTKDSRVYEWNI 440
R++ S K R++EW I
Sbjct: 418 RRFASTSDDKSVRIWEWEI 436
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 3 LQFGSNETWQKLCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 155
+++G N+ L DGK + +G + WD T + + + PD+H T
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 3 LQFGSNETWQKLCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 155
+++G N+ L DGK + +G + WD T + + + PD+H T
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 3 LQFGSNETWQKLCFPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 155
+++G N+ L DGK + +G + WD T + + + PD+H T
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 42 FPEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 200
+ DG +T +DG++KIW++ ++ T D H TS T ++WT +++
Sbjct: 368 YSPDGSLMATGAEDGKVKIWNSRSSFC--TVTFDEH-TSGVTAVKWTQSGRAI 417
>Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical
protein T01C3.1 protein.
Length = 727
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 9 FGSNETWQKLCF-PEDGKYYSTITKDGRLKIWDTETNVLKQ 128
FG + + +CF P+D + T +D ++KIWD + +K+
Sbjct: 136 FGHEGSVRSICFAPDDPNVFVTGGRDFQVKIWDMRVSTVKK 176
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 42 FPEDGKYYSTITKDGRLKIWDTETN 116
+ E+ + Y T +KDG +KIWD +N
Sbjct: 267 YSENARLYVTASKDGHVKIWDGVSN 291
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 12 GSNETWQKLCFPEDGKYYSTITKDGRLKIWD 104
G + + F E+G Y +T ++DG +K+WD
Sbjct: 378 GHTAAVRSIAFSENGYYLATGSEDGEVKLWD 408
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 3 LQFGSNETWQKLCFPEDGKYYSTITKDGRLKIWDTETN 116
LQ W + F +G+Y T D ++KIWD E N
Sbjct: 321 LQTECGWNWDAI-FSSEGRYIFTGGNDNQVKIWDVENN 357
>Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical
protein C47A10.9 protein.
Length = 325
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 561 VTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLV-SFNDTYYIV 695
V A + L LW D ++ LG++T+ +S++ +F + YYI+
Sbjct: 72 VLAGFPLGLWSWLEVDTGIVMFLGFTTAFLMPISVIKTFENRYYIL 117
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 420 RVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQL 581
R W D S+ + + NN +N N +IPH +S +L+T +QL
Sbjct: 110 RCCNWAFPDKSLLHIHLQTATNNNDSNNNNN--SVIPHGVINRSCHLITDPFQL 161
>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
protein F56H1.3 protein.
Length = 1174
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 570 SYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIV 695
S QL WR HN D +K +G S S + +L S ND Y++
Sbjct: 604 SNQLECWRTHNFDPIKLK-IGASFS-SVLLKFPSENDMKYVI 643
>AJ133597-1|CAC35530.1| 684|Caenorhabditis elegans soluble
guanylate cyclase protein.
Length = 684
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 555 YLVTASYQLSLWRL--HNKDVTLIKSLGYSTSQTAILSLVS 671
Y +T S + S+W + H++D+ + GY +TAI + V+
Sbjct: 625 YFLTRSLKKSIWEIIDHDRDINVSSIEGYEELETAIENAVT 665
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 282 NGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 449
+G + I+ Q ++ + H +A VT L W + +YS ++D V W +DG
Sbjct: 216 DGNIFIWDTVQGTVVRCL--SGH-TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 36 LCFPEDGKYYSTITKDGRLKIWD 104
+CF +GKY + D LK+WD
Sbjct: 388 VCFSPNGKYLLSAQLDSSLKLWD 410
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 270 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 431
L + +L S S+ + + PAKH A + W GL S + S + E
Sbjct: 201 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 254
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 270 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 431
L + +L S S+ + + PAKH A + W GL S + S + E
Sbjct: 382 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 435
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 399 YSCTKDSRVYEWNIEDGSVKQTYNISIENN 488
YSCT +NI + ++ YNIS E N
Sbjct: 370 YSCTSKCNSVRYNINNNDDEELYNISGETN 399
>AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical
protein C08F1.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 465 YNISIENNTKQGSNINAIKIIPHNQH-KKSRYLVTASYQLSLWRLHNKDVTL 617
++ISI+NN + ++ + N+ +K R+ + ASYQLSL H +TL
Sbjct: 306 WSISIKNN----NGFASLMLNCENELIEKERWAIQASYQLSLVYCHGNRITL 353
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 264 IVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYG----LYSCTKDSRVYE 431
I+ G NG ++I+ +++ ++ + H S K+TA+ + S + D RV
Sbjct: 42 IITGAENGHIIIWKLAEG-LMPKQLMIGH-SQKITAISQTTNTPTNTRFVSASADGRVCL 99
Query: 432 WNIEDG-SVKQTYNISI 479
W I+DG + T +I+I
Sbjct: 100 WEIQDGRCIDSTSSIAI 116
>U80029-14|AAB37593.2| 213|Caenorhabditis elegans Hypothetical
protein T20D4.4 protein.
Length = 213
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 396 LYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKI 524
L++ + D+R ++ ++EDG +++++ + +KQ N I I
Sbjct: 171 LWTISLDARAFKADLEDGINSESFSVEVFWKSKQDHNQTTISI 213
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 573 YQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYI 692
Y ++L+ ++KDV L Y TSQ I L ND++ I
Sbjct: 25 YFINLFCTYHKDVNKSPCLSYETSQELINLLGILNDSFKI 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,000,147
Number of Sequences: 27780
Number of extensions: 399932
Number of successful extensions: 1146
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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