Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B09
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 305 6e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 168 8e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 155 7e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 120 2e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 8e-21
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 89 7e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 85 1e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 66 8e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 5e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.21
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.48
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 3.4
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.4
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.9
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 7.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 305 bits (748), Expect = 6e-84
Identities = 138/149 (92%), Positives = 144/149 (96%)
Frame = +1
Query: 25 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 204
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 205 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 384
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 385 IMFETFNTPAMYVAIQAVLSLYASGRTTG 471
I+FETFN PA YVAIQAVLSLYASGRTTG
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTG 150
Score = 180 bits (438), Expect = 2e-46
Identities = 85/93 (91%), Positives = 90/93 (96%)
Frame = +2
Query: 473 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 652
IVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVR
Sbjct: 151 IVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210
Query: 653 DIKEKLCYVALDFEQEMATAASSSSLEKSYELP 751
DIKEKLCYVALDFEQE+ TAA SSSLEKSYELP
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELP 243
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +1
Query: 751 DGQVITIGNEXFRCPXALFNP 813
DGQVITIGNE FR P ALF P
Sbjct: 244 DGQVITIGNERFRAPEALFQP 264
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 168 bits (409), Expect = 8e-43
Identities = 76/144 (52%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +1
Query: 43 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 222
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 223 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 399
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 400 FNTPAMYVAIQAVLSLYASGRTTG 471
N PA+ ++Q VL+LYAS RTTG
Sbjct: 132 LNVPALSFSLQPVLALYASARTTG 155
Score = 100 bits (239), Expect = 3e-22
Identities = 44/93 (47%), Positives = 66/93 (70%)
Frame = +2
Query: 473 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 652
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVR 215
Query: 653 DIKEKLCYVALDFEQEMATAASSSSLEKSYELP 751
+IKEK CYVA DF E+ + +Y+LP
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLP 248
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 751 DGQVITIGNEXFRCPXALFNP 813
D Q IT+G E F P LFNP
Sbjct: 249 DNQTITLGTECFSAPEVLFNP 269
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 155 bits (376), Expect = 7e-39
Identities = 73/149 (48%), Positives = 105/149 (70%), Gaps = 2/149 (1%)
Frame = +1
Query: 31 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 204
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 205 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 384
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 385 IMFETFNTPAMYVAIQAVLSLYASGRTTG 471
MFE + +YVAIQAVLSLYA G ++G
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSG 150
Score = 105 bits (251), Expect = 1e-23
Identities = 47/96 (48%), Positives = 67/96 (69%)
Frame = +2
Query: 473 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 652
+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR
Sbjct: 151 VVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVR 210
Query: 653 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPTVR 760
++KEKLCYV+ D E + + ++ L ++Y LP R
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGR 246
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 751 DGQVITIGNEXFRCPXALFNP 813
DG+VI +G+E + CP LF P
Sbjct: 244 DGRVIKVGSERYECPECLFQP 264
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 120 bits (290), Expect = 2e-28
Identities = 66/162 (40%), Positives = 91/162 (56%), Gaps = 24/162 (14%)
Frame = +1
Query: 43 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 171
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 172 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 330
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 331 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 456
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 63.3 bits (147), Expect = 4e-11
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +2
Query: 476 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIV 649
V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER--- 239
Query: 650 RDIKEKLCYVALDFEQEMA 706
IKE+ CYV D +E +
Sbjct: 240 --IKEECCYVCPDIVKEFS 256
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.5 bits (227), Expect = 8e-21
Identities = 53/147 (36%), Positives = 80/147 (54%)
Frame = +1
Query: 28 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 207
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 208 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 387
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 388 MFETFNTPAMYVAIQAVLSLYASGRTT 468
MFE+ PA Y+A Q + +ASG+ T
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGT 147
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 89.0 bits (211), Expect = 7e-19
Identities = 47/148 (31%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 10 SFKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 189
SF+ ++ LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG+
Sbjct: 17 SFQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGN 71
Query: 190 EAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 366
+ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 72 DTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYV 130
Query: 367 REKMTQIMFETFNTPAMYVAIQAVLSLY 450
R MT+++FE +N P++ I + S Y
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFY 158
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +2
Query: 473 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 652
IVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 168 IVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAE 227
Query: 653 DIKEKLCYVALDFEQEMATAASSSSLEK 736
+ C+V+ D+ ++A A LE+
Sbjct: 228 LLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 85.0 bits (201), Expect = 1e-17
Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Frame = +1
Query: 28 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 207
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 208 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 381
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 382 QIMFETFNTPAMYVAIQAVLSLYASGRTT 468
+ FE + PA Y+ QAV +A+ ++T
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKST 150
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 65.7 bits (153), Expect = 8e-12
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = +2
Query: 470 VIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 649
V+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 158 VLVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIV 215
Query: 650 RDIKEKLCYVALDFEQEMATAASS--SSLEKSYELP 751
+IKE +CYV+ +F+++M S LE Y LP
Sbjct: 216 NEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALP 251
Score = 35.1 bits (77), Expect = 0.013
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +1
Query: 43 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 222
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 223 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 390
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 391 FETFNTPAMYVAIQAVLSLYASGRTT 468
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 5e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 229 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 396
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 397 TFNTPAMYVAIQAVLSLYASG 459
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 289 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 432
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 88 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 231
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 185 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 24
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 196 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 107
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 476 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 622
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 225 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 46
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 188 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 72
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 4.4
Identities = 34/141 (24%), Positives = 56/141 (39%)
Frame = +2
Query: 392 SKHSTRPPCTSPSKPCSRCTHPVVPPVIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 571
S+H R PC SP S + PV +L S H G + A + L R
Sbjct: 513 SRHGPREPCLSPD--ASSSSIPVTDIKEILPSQHDTPHNSVKLTGSSTTPASVSL----R 566
Query: 572 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP 751
+ + L+ +G FT + + + EK+ + + E T + SSS + L
Sbjct: 567 QMIEPLLSRTPPKG-EFTNSLDDTPTQSNVEKVDRFLENHDWE--TCSESSSASEDQSLC 623
Query: 752 TVRSSPSETKXSVAXRLSSTL 814
SS S + ++ +L + L
Sbjct: 624 KQLSSFSLSSSDISKKLKNNL 644
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 331 LLTEAPLNPKANREKMTQIMFETFN 405
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 394 ETFNTPAMYVAIQAVLSLYASGRTTGYRAGLRRRCLPHRAHLRGIRTPPRHPASGLS--- 564
+ N A+ + I L S R T A + + +R +R P ASG++
Sbjct: 29 KVINLNALKMRISKKHQLSESPRLTDIIAAIPPDAYLKESLMRKLRAKPVRTASGIAVVA 88
Query: 565 -RSRPHRLPH 591
+PHR PH
Sbjct: 89 VMCKPHRCPH 98
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 225 FEGQDTSFALCLISYIRVLLSHTDHHA 145
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,670,941
Number of Sequences: 5004
Number of extensions: 80975
Number of successful extensions: 293
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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