Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B05
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.24 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   5.2  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 310 PVGKGYRSLNLALRKEFDLYANVRPCKSLEGIK 408
           PV + Y+SLNLA +K  + Y++    KSL  +K
Sbjct: 445 PVNENYKSLNLAAQKR-EYYSHYVAFKSLSYLK 476


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 507 HQADHGGGQYESGGVR 554
           HQ DHG G    GG R
Sbjct: 96  HQQDHGSGMDGMGGYR 111


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 516 DHGGGQYESGGVRLPVRQRKQEEEG 590
           DH   +  +GG R P+R++++ E G
Sbjct: 6   DHWHKRRATGGKRKPIRKKRKFELG 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,902
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)