Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B04
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 8e-05
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 31 0.20
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.62
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 4.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 4.4
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 4.4
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.8
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 7.7
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 7.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 7.7
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 579 VPTYEVLDKR-DTLDEFKILFNKIKKIGIRVIVDLIPNYVXPNHTWFVQSENS-TXPYTD 752
V Y+ +D R TL++ L + + +++++DL+ N+ H WF +S +S T P D
Sbjct: 73 VSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRD 132
Query: 753 YFIW 764
++ W
Sbjct: 133 WYFW 136
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.1 bits (67), Expect = 0.20
Identities = 28/89 (31%), Positives = 37/89 (41%)
Frame = -3
Query: 487 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 308
PT PSS S T+TA S T T + T SS Y+S SS
Sbjct: 464 PTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSPYYSNSS 515
Query: 307 LVIPVNCRLLASSSIFASPFLWSPTTYFA 221
+++P S S F+S SPT+ F+
Sbjct: 516 IIVPTTVSTSGSVSSFSSS--PSPTSSFS 542
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -3
Query: 484 TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 311
TR SSY + S + + ++ +P+S S+++ ++ +S + K SS+ S+S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 663 RVIVDLIPNYVXPNHTWFVQSENSTXPYTDYF 758
R I+D++ NY+ + V E YTD+F
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFF 487
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 594 VLDKRDTLDEFKILFNKIKKIGIRVIVDLIPNYVXPNHTWF 716
VL T D F I+KI I+V VD++ +++ PN T F
Sbjct: 221 VLQCMSTDDYFLSSSKNIQKI-IKVYVDMLNSFISPNVTTF 260
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 615 VCHVCRALRKSALGRTRPE 559
VC +C +L K+A+GR RP+
Sbjct: 102 VCGLCVSLLKNAVGRPRPD 120
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -2
Query: 707 MVGXHVVRYQINNHSYSDLLNFVKQNFEFVQCVTFVEHF----VSRHLDEHAL 561
MV + Q NH+Y+DLL ++ + +HF ++R L++H+L
Sbjct: 1447 MVAIQHLNIQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAIALARRLEKHSL 1499
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 457 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 299
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 369 VLFWVAWLCMLAGAIAVI 422
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -3
Query: 445 GPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSS 266
GP +G+R + + + + T + + +QK S +Y + SL +P LL ++
Sbjct: 523 GPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLLIGTT 582
Query: 265 IF 260
F
Sbjct: 583 RF 584
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,285
Number of Sequences: 5004
Number of extensions: 63080
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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