Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B03
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.27
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.48
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 3.4
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 26 5.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.9
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.8
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 7.8
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.27
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 44 TRSRPRHVTAGVPQGSALSPLLFSLYINDI 133
T +R ++ G PQGS +SP+L ++Y++ +
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.48
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 197
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 198 GRRRCFIDDFRPQLPP 245
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 257 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 373
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 30 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 185
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.4
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = +3
Query: 291 KAQRCSSKGVALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSXSRM 470
K SSK +L S + + PPPP +Q ST P ASPS +
Sbjct: 6 KLHEISSKFASLGLGSLKSTPKARETTEPPPPSSQQPPST-----PNGKEA-ASPSALKQ 59
Query: 471 TFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCI 599
RP + +V+ A I + S +SL+++ L K +
Sbjct: 60 NVRPSLNSVQQTPASI-----DAVASSSNVSLQSQQPLSKPVV 97
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 808 PLYR-SGAWTPD*RYLLMDSKSRSSW 734
P+YR G+WT +Y + + RS+W
Sbjct: 258 PIYRIEGSWTGMLKYCTFEDQKRSAW 283
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 134 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 304
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 305 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 394
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 74 GVPQGSALSPLLFSLYINDI 133
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 439 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 344
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,617,471
Number of Sequences: 5004
Number of extensions: 79196
Number of successful extensions: 249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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