Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B03
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 74 1e-13
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 54 1e-07
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 51 1e-06
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 42 7e-04
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 33 0.26
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 33 0.26
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 31 1.0
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 30 1.8
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 30 1.8
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 30 1.8
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 30 1.8
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 30 1.8
Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 5.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 5.5
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 7.3
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 7.3
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 7.3
U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical pr... 28 7.3
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 7.3
AC024812-3|AAF59551.1| 183|Caenorhabditis elegans Hypothetical ... 28 7.3
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 28 9.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 28 9.6
AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical ... 28 9.6
AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical ... 28 9.6
AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical ... 28 9.6
AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical ... 28 9.6
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 74.1 bits (174), Expect = 1e-13
Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Frame = +2
Query: 8 LSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTA 181
LSNRSFR R+ T S + T GVPQG+ LSPLLF +Y+NDI +A FADDT
Sbjct: 54 LSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK 113
Query: 182 IYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGR 322
+Y S K LQ+A + W + ++ +N +K+ V + R
Sbjct: 114 LYAS-TPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRR 159
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 465 RMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAA 644
++ F H + + A F L ++ +K + + LYKT IRP + Y +VV +
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRPRLEYGTVVSSPTK 243
Query: 645 RIHLKSFQII*SRFCR 692
+ K+ + + + F R
Sbjct: 244 KSDEKTIESVQNAFTR 259
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/101 (29%), Positives = 51/101 (50%)
Frame = +2
Query: 8 LSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIY 187
L R R + S+ + GVPQGS +SP LF+ Y+ D+P +T L +ADD +I
Sbjct: 510 LHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSII 569
Query: 188 YSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLF 310
+K ++Q + ++ ++ + I+ KST +F
Sbjct: 570 ARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVF 610
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Frame = +2
Query: 8 LSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYIND--IPRSPETHLALFADDT 178
L NR+F ++ S+ + +++GVPQGS PLLF L+IN+ I +P +++ FADD
Sbjct: 857 LENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDV 916
Query: 179 AIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSI 346
I+++ +Q + + W + + + PTKS A+L R N + S+
Sbjct: 917 KIFHTD------PTIIQNSIDIIVSWSKLNELPLAPTKS-ALLALGTRNKNQSYSV 965
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 8 LSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYINDIPRS--PETHLALFADDT 178
LS+R+F +V H +++GVP+GS P LF ++IN + S P + FADD
Sbjct: 33 LSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDL 92
Query: 179 AIY 187
+Y
Sbjct: 93 KVY 95
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 462 SRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFA 635
S++TF+PHIK + + L R ++ + L+KT I P++ Y S V++
Sbjct: 204 SKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVYS 258
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 293 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAP 430
ST + PP T P P R+ NP+P+ +P + P P P
Sbjct: 449 STGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 494
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 311 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKYLGVTLXQ*DDIPPP 484
K +PP + +PLP RR + P V P + P P P + + +PPP
Sbjct: 233 KTTKPPQHLIILPLPPRRASPAPPRVIPHVIMQPPRP-RPPISTADLCTPAFQQLPPP 289
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 293 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAP 430
ST + PP T P P R+ NP+P+ +P + P P P
Sbjct: 456 STGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 501
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 465 RMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAA 644
++ F H K + A F L ++ +K + + LYKT IRP + Y +VV +
Sbjct: 157 KLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGTVVSSPTK 213
Query: 645 RIHLKSFQII*SRFCR 692
+ K+ + + + F R
Sbjct: 214 KSDEKAIESVQNAFTR 229
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 SGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFA---QSRCSTSPYRGPRR 434
SGA L QR ++ + +S+S + + + PPPP QS S + Y+
Sbjct: 74 SGAQPLPSVLTQRTTTSSYSAPNYSASSMSGVPSDVAPPPPLPIPNQSSSSAASYQHHHA 133
Query: 435 SNI*ASPSXSR 467
S+I S S SR
Sbjct: 134 SSISKSISSSR 144
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 SGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFA---QSRCSTSPYRGPRR 434
SGA L QR ++ + +S+S + + + PPPP QS S + Y+
Sbjct: 74 SGAQPLPSVLTQRTTTSSYSAPNYSASSMSGVPSDVAPPPPLPIPNQSSSSAASYQHHHA 133
Query: 435 SNI*ASPSXSR 467
S+I S S SR
Sbjct: 134 SSISKSISSSR 144
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 SGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFA---QSRCSTSPYRGPRR 434
SGA L QR ++ + +S+S + + + PPPP QS S + Y+
Sbjct: 74 SGAQPLPSVLTQRTTTSSYSAPNYSASSMSGVPSDVAPPPPLPIPNQSSSSAASYQHHHA 133
Query: 435 SNI*ASPSXSR 467
S+I S S SR
Sbjct: 134 SSISKSISSSR 144
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 SGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFA---QSRCSTSPYRGPRR 434
SGA L QR ++ + +S+S + + + PPPP QS S + Y+
Sbjct: 74 SGAQPLPSVLTQRTTTSSYSAPNYSASSMSGVPSDVAPPPPLPIPNQSSSSAASYQHHHA 133
Query: 435 SNI*ASPSXSR 467
S+I S S SR
Sbjct: 134 SSISKSISSSR 144
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 132 ISLIYKLNSNGERAEPCGTPAVT*RGRER 46
ISL S GER +PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical
protein B0240.4 protein.
Length = 588
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 353 PTRRVNNPAPAVRPITMFDQPIPW 424
P R V++P +PIT+FDQ + W
Sbjct: 46 PNRTVSSPRVQQKPITIFDQIVDW 69
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 3.2
Identities = 44/155 (28%), Positives = 55/155 (35%), Gaps = 1/155 (0%)
Frame = +3
Query: 6 SCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 185
S R RS S+ P P K+P R S S P RR +S PP+
Sbjct: 301 SPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPA 360
Query: 186 TTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLGA 365
R R R + P S S S + R + S P A
Sbjct: 361 PKRAKSRSKSPPARRRRSP---SASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSA 417
Query: 366 SITPP-PPFAQSRCSTSPYRGPRRSNI*ASPSXSR 467
S +PP P A+SR + P PRR SPS S+
Sbjct: 418 SKSPPAPKRAKSRSKSPP--APRRRR---SPSQSK 447
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 713 PRGSDGYPAKTGLNNLKG 660
PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 713 PRGSDGYPAKTGLNNLKG 660
PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 713 PRGSDGYPAKTGLNNLKG 660
PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 57 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGR 203
P T+ + +P + +S +P LRR +S P PP+TT R
Sbjct: 131 PTTTTTPAPTTTTTPNFLEKSLSMFFPSLRRKP-QSIPTLPPTTTPTPR 178
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 369 LTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRNHCPM 244
LT VG G+L ++ PLL + + ++G +S + H P+
Sbjct: 275 LTATVGTGLLMLLSENNPLLSNKVLTYIGDISYSLYLVHWPI 316
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 3 HSCRTVRSDIESRERVPGPVTSQPESRKAPPSPRY 107
H+ +R DI + R P PV P R PP P Y
Sbjct: 135 HNKMIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 168
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 3 HSCRTVRSDIESRERVPGPVTSQPESRKAPPSPRY 107
H+ +R DI + R P PV P R PP P Y
Sbjct: 776 HNKMIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 3 HSCRTVRSDIESRERVPGPVTSQPESRKAPPSPRY 107
H+ +R DI + R P PV P R PP P Y
Sbjct: 776 HNKMIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical
protein K05F1.9 protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 57 PVTSQPESRKAPPSPRYYSVCISTIYPGLR-RPIWRSSPMTPPSTTRVGRRRCFIDDFRP 233
P T PE+ K YY +T+ + R +W+++ + G RR FID +P
Sbjct: 87 PATVIPENNKHY-FVVYYIKAANTVKEKIPVRDLWKAAASSE------GTRRVFIDFKKP 139
Query: 234 QLPPWDSGSG 263
+LPP ++ G
Sbjct: 140 ELPPTEAEDG 149
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 3 HSCRTVRSDIESRERVPGPVTSQPESRKAPPSPRY 107
H+ +R DI + R P PV P R PP P Y
Sbjct: 776 HNKMIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>AC024812-3|AAF59551.1| 183|Caenorhabditis elegans Hypothetical
protein Y54E10BR.5 protein.
Length = 183
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 399 VIGRTAGAGLLTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRN 256
V+GRT G LL + GM++++ P LK + F+GL + H N
Sbjct: 141 VVGRTKG--LLPYV---GMVTIIMNDYPKLKYAVLAFLGLFVLLHKEN 183
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
protein M02E1.1a protein.
Length = 1077
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 338 LSIPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKYLG 448
++ PLP+ P VRP T FD IP+ ++G
Sbjct: 890 MATPLPSFN-GRPPSVVRPRTAFDMNIPYGTDSNFIG 925
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 722 PDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEH 627
P+ PRG G P +TG + +G GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184
>AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical
protein T10D4.6 protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.6
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Frame = +3
Query: 57 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 236
P T + S + PSP +C S+++ SP TP S RV R P
Sbjct: 511 PATEEETSGSSDPSPSTSDLC-SSMHAC-------DSPATPESENRVSEERSESSRSLPP 562
Query: 237 L----PPWDSGSGSGAST-LTPRKAQRCSSKGVALRTPR*ASLSRLGAS--------ITP 377
P ++G AS+ +P + SS T + A+ R +S ++
Sbjct: 563 TVAVCPATETGEDPHASSDPSPSTSDLRSSMDADPATEKRATEERSESSRSLPPTVDVSS 622
Query: 378 PPPFAQSRCSTSP 416
PPP A S CS P
Sbjct: 623 PPPVASSSCSPYP 635
>AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical
protein T08E11.4 protein.
Length = 704
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 369 ITPPPPFAQSRCSTSPYRGPRRSNI*ASPSXSRMTF 476
+T PP QS TS + SN+ SPS SR +
Sbjct: 167 VTTTPPIQQSHLGTSRLTTVQSSNLDRSPSPSRSRY 202
>AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical
protein Y102A11A.2b protein.
Length = 753
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 345 SLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSXSRMTF 476
S S +T PP QS T+ + SN+ SPS SR +
Sbjct: 360 SYSNPSTKVTTTPPIQQSHLGTNYLTTVQSSNLDRSPSPSRSRY 403
>AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical
protein Y102A11A.2a protein.
Length = 772
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 345 SLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSXSRMTF 476
S S +T PP QS T+ + SN+ SPS SR +
Sbjct: 360 SYSNPSTKVTTTPPIQQSHLGTNYLTTVQSSNLDRSPSPSRSRY 403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,193
Number of Sequences: 27780
Number of extensions: 497031
Number of successful extensions: 1681
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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