Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_B02
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.21
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 30 0.48
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 28 1.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.5
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 28 1.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 5.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 5.9
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 5.9
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 5.9
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 7.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 7.8
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.1 bits (67), Expect = 0.21
Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
Frame = +1
Query: 253 SAKETTR-PAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATY 429
S+ ETT P++ SL G + +L+ + D T+ + I +
Sbjct: 313 SSSETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVI 372
Query: 430 SPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAV 609
SP+V S + TN+G++ GD +++ +++ +T V + + T
Sbjct: 373 SPSVSSPTSSILTNSGSI--KSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTY 430
Query: 610 LGFELLHEKASTFDNHIRYISQYIMKKAGVKES 708
L + N I Y + + + +K S
Sbjct: 431 DSHTFLTTITPSPSNSISYTNNTFIPSSSIKSS 463
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 133 ETFIEQWMAFSLNYVNGASPNLENLDLFVRKEFSKRRTNASAKETTRPAAGKSLTVYGAK 312
E ++ + S + + PNL + F F + N AKE++ A S+T Y K
Sbjct: 197 EVCVDSITSLSFDKTDMTKPNLSSYKTFFETNFIENTKNFYAKESSEYLASHSITDYLKK 256
Query: 313 A 315
A
Sbjct: 257 A 257
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 268 TRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATYSPTVG- 444
T P S ++ GAK + PP + + + + +++K+ +N P T +P++
Sbjct: 239 TIPKGTPSTSIEGAKTSIPPSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYTPAPSITV 298
Query: 445 SAKYASRT-NAGTVVHSYGD 501
Y T G S+GD
Sbjct: 299 PPNYIPNTAMMGPSYSSFGD 318
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +1
Query: 244 TNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPA 423
T++S T A S+ A S S + SS + ++ ++ + V
Sbjct: 487 TSSSIFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVST 546
Query: 424 TYSPTVGSAKYASRTNA 474
+Y P S+ YAS T A
Sbjct: 547 SYIPNASSSVYASSTEA 563
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 623 SSKPNTAFV*TSSSSLGTCVIFKLSTSFELFALPNSCSNFSSP 495
+S+P TAF +SSS+ T +STS + N S++SSP
Sbjct: 772 ASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMN--SSYSSP 812
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 427 YSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKAN 534
Y+P+V K A++ ++ YGDE + E+G N
Sbjct: 214 YAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMN 249
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 307 AKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVP 420
A TSP + + S++ A PKR + A T+P+ I+P
Sbjct: 192 ASNTSPTPNSIKSAHPAEPPKRPAFTRSA-TSPDKILP 228
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -1
Query: 269 VVSLADALVRRLENSFLTNKSKFSKFGEAPFT*FKLNAIHCSIKVSASILFSSHKFTHFN 90
V LAD R L N S + + F++ A+H + VS S+ + H
Sbjct: 210 VARLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISL--RNKAIQHLL 267
Query: 89 KTSCSTFMPKNLNC 48
K+ + K +NC
Sbjct: 268 KSKIAANTDKAINC 281
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 82 DVLLKCVNLCEENN-IDAETFIEQWMAFSLNYVNGASPNLENLDLFVRK 225
D+ ++ C+E +DA I+ W++ L++ N+ + F+RK
Sbjct: 148 DLTSSILDACDEEILVDARNQIKNWLSSELSHSTSKYLNITTSNRFIRK 196
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 418 PATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVY 597
P TY +G R G ++ D+K +E+ N+ + IT+VP DD E
Sbjct: 439 PQTYLHRIGRTGRFGRV--GVSINFVHDKKSWEEM---NAIQEYFQRPITRVPTDDYEEL 493
Query: 598 TKAV 609
K V
Sbjct: 494 EKVV 497
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 538 SCSLYLILVVISHLHKNGPPCLRLFSTRTSLN 443
SC L+ + S KN P CL LFS+ +N
Sbjct: 118 SCGLFFVSYFFSL--KNNPFCLMLFSSHEKMN 147
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 590 SSSSLGTCVIFKLSTSFELFALPNSCSNFSSP*EWTT 480
S SL I LS ++ L++ + N S+P WT+
Sbjct: 1176 SKKSLSELKILGLSQTYLLYSYNSKVDNISNPGSWTS 1212
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 7.8
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 5/138 (3%)
Frame = +1
Query: 223 KEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTN 402
KE ++N A P+ S T S +S++ + + V +T
Sbjct: 1184 KENISSQSNRKADNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGVLSTPRSTRK 1243
Query: 403 PNNIVPATYSPTVGSAKYASRTNAGT----VVHSYGDEKLLQELGK-ANSSNDVLSLKIT 567
+ + S V S +A V+ +G + Q L + A + SL T
Sbjct: 1244 KRKLGRKSQSSNVNKEVAISEVSATLENVEVIERHGISEQGQNLDESACVLTNESSLSQT 1303
Query: 568 QVPNDDDEVYTKAVLGFE 621
++P + E T AV GFE
Sbjct: 1304 EIPEEKTENETTAVNGFE 1321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,385
Number of Sequences: 5004
Number of extensions: 73757
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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