Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_B02
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0765 - 27910189-27912393,27912521-27912598                       33   0.38 
09_03_0056 - 11936264-11939677                                         32   0.66 
10_08_0480 - 18203186-18203284,18203821-18204006,18204590-182047...    30   2.0  
04_03_0021 - 9548600-9548794,9548851-9549006                           30   2.0  
01_01_0297 - 2437487-2437777,2438088-2438123                           30   2.0  
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827...    28   8.2  
02_01_0013 - 85332-85637                                               28   8.2  

>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = +1

Query: 244 TNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPA 423
           T  S      PAA  +     A A   PDS V +  V  +P  V        +P +IV A
Sbjct: 389 TTCSPAAAGMPAAAVAAAGSTAPAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAA 448

Query: 424 TYSPTVGSAKYAS 462
           + SP    A + S
Sbjct: 449 SSSPAAAVAAFGS 461


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +1

Query: 88  LLKCVNLC----EENNIDAETFIEQWMAFSLNYVNGASPNL----ENLDLFVRKEF 231
           L +C + C    + +  DAET ++ W+A  L   NG+ P +    E  D  VR+ F
Sbjct: 568 LKRCFSFCSMYPKSHEFDAETLVDSWVAVGLVVSNGSVPAVDIGHEYFDQLVRRSF 623


>10_08_0480 -
           18203186-18203284,18203821-18204006,18204590-18204736,
           18204829-18204912,18206290-18206532
          Length = 252

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +1

Query: 430 SPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANSSNDVLSLKITQVPNDDDEVYTKAV 609
           SP    ++Y     AG      G    ++E+GK  S   ++ +   ++P+D      +A+
Sbjct: 63  SPAAAVSRYNRMARAGADEVQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEAL 122

Query: 610 LGFELLHEKASTF-DNH 657
           +   LLH K ST  +NH
Sbjct: 123 I---LLHSKVSTLAENH 136


>04_03_0021 - 9548600-9548794,9548851-9549006
          Length = 116

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 364 PKRVKIEK--DATTNPNNIVPATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKANS 537
           P + +I K   +  N +NIVP T        K    T  GT+V  Y   KL+ ++   +S
Sbjct: 17  PPKSRIPKLGGSEVNESNIVPITLDKLTPEQKKDLETRQGTIVQRY-KMKLVADVAGTSS 75

Query: 538 SND 546
           S D
Sbjct: 76  SKD 78


>01_01_0297 - 2437487-2437777,2438088-2438123
          Length = 108

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/88 (26%), Positives = 39/88 (44%)
 Frame = +1

Query: 256 AKETTRPAAGKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNPNNIVPATYSP 435
           A+E  R A    L + G  +     ++V  + ++   K +      T NP      +Y+ 
Sbjct: 10  AEELPRNATAGFLGIMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69

Query: 436 TVGSAKYASRTNAGTVVHSYGDEKLLQE 519
            +  A+   RTN  T+++S G  K LQE
Sbjct: 70  QI-LAEDGRRTNVITMLNSQGTTKALQE 96


>03_06_0777 +
           36181095-36181311,36181444-36181530,36181785-36182725,
           36182956-36183006,36183240-36183328,36184975-36185078,
           36185179-36185278,36185396-36185471,36185556-36185670,
           36185755-36186286,36187032-36187527
          Length = 935

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 694 PPSSLCTAICIECDYQTYWLFRGEVQNPTPPLCKLRHR 581
           PP+SL ++  + C  Q + L R     P+PP  +LR R
Sbjct: 2   PPASLVSSPPLACCLQLHRLLRPAALLPSPPRLRLRLR 39


>02_01_0013 - 85332-85637
          Length = 101

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 190 PNLENLDLFVRKEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDS 333
           PN+ +  L    E+  +  +ASA ++T  A  K+ T   +++T PP S
Sbjct: 50  PNVNSKILSKVIEYCNKHVHASADDSTSSADLKNWTPTSSRSTRPPSS 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,483,230
Number of Sequences: 37544
Number of extensions: 461674
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)