Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_A23
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.71 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.8  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = +2

Query: 356 STPSGGTHAPGSIREAMANAGSMPPPSENKGELRRKKKS--YYAALKKQEDNKLAELAEK 529
           S PS       S+R++    G        +G    ++ S   Y A  + E+N   E    
Sbjct: 336 SNPSITRTGLSSVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMENNLRGETQSN 395

Query: 530 YRDRARERRDGVNDLSVIDPTSN 598
           YR+  + +    NDL   +  +N
Sbjct: 396 YREMEKRQSVPANDLLTTEKDNN 418


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 458 RKKKSYYAALKKQEDNKLAELAE--KYRDRARER 553
           R  +  Y+  +++E N      E  KYR+R++ER
Sbjct: 33  RTSRKRYSRSREREQNSYKNEKEYRKYRERSKER 66


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 458 RKKKSYYAALKKQEDNKLAELAE--KYRDRARER 553
           R  +  Y+  +++E N      E  KYR+R++ER
Sbjct: 33  RTSRKRYSRSREREQNSYKNEKEYRKYRERSKER 66


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 449 ELRRKKKSYYAALKKQEDN-KLAELAEKYRDRARER 553
           E R  +K Y  + ++++ + K      KYR+R++ER
Sbjct: 31  EERTSRKRYSRSREREQKSYKNERKYRKYRERSKER 66


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 449 ELRRKKKSYYAALKKQEDN-KLAELAEKYRDRARER 553
           E R  +K Y  + ++++ + K      KYR+R++ER
Sbjct: 31  EERTSRKRYSRSREREQKSYKNERKYRKYRERSKER 66


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 431 PSENKGELRRKKKSYYAALKKQEDNKLAELAEKYRDR 541
           P E   E+ R  ++YY    K ++  L  L +   DR
Sbjct: 379 PKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASDR 415


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 431 PSENKGELRRKKKSYYAALKKQEDNKLAELAEKYRDR 541
           P E   E+ R  ++YY    K ++  L  L +   DR
Sbjct: 379 PKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASDR 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,197
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)