Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_A15
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.66 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 539  TXXPGAKPLVPHKLRISVVITDQIRVLLIHLNLFS 435
            T   G+KP++P   R   V T+ I    +HLN +S
Sbjct: 1454 TRTKGSKPIIPEAARFIEVATNSI---TLHLNAWS 1485


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 403 IASETSQRSNSHISRHLKHYSYLYKLKMMHGFD 305
           +A E    ++  + +HL  Y  + K+K + G D
Sbjct: 420 LAKEHKAAADQKLEKHLIEYKKMLKIKRLFGKD 452


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 65  YFASLNLTFFVVLTEYTYTFIYNLIKHH*RASVKKFLNLRSLFKFS 202
           +F  + + F   + +Y Y  + +++  H R  +    NL    KFS
Sbjct: 65  FFDQMGVHFVGFVGQYGYDRVLSVLGRHVRDFLNGLDNLHEYLKFS 110


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 68  FASLNLTFFVVLTEY 112
           FA LN+T++++  EY
Sbjct: 413 FAVLNVTYWIMFAEY 427


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 LCLNLVKIYATLPLRL 233
           L L L  ++ATLPLRL
Sbjct: 136 LLLMLYLLFATLPLRL 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,765
Number of Sequences: 438
Number of extensions: 2645
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)