Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_A09
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    80   3e-16
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    27   2.5  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    27   3.4  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   7.8  

>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 1/234 (0%)
 Frame = +2

Query: 101 ASC-QCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGLGVTREVGQDLVNLNAKNVCVM 277
           +SC Q   +G +     S A P+   AF I    + +G G   E  + +     KN  ++
Sbjct: 24  SSCNQSFTNGLKHQSTSSKAMPVS--AFYIPSFNL-FGKGCLAEAAKQIKMSGFKNTLIV 80

Query: 278 TDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFKDAIHFAKEGNFDSFVAIGG 457
           TDP +  +     V   L    I   +YD V+  PT G+    +   K+ N DS V+IGG
Sbjct: 81  TDPGIIKVGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVNQGLEIVKKENCDSMVSIGG 140

Query: 458 GSVMDTCKAANLYYSDPDAEFLDYVNAPVGKGKAVNIQVKPMIAIPXXXXXXXXXXXXXI 637
           GS  D  K   L  ++   +  DY     G  K+   Q+ P+IAI              I
Sbjct: 141 GSAHDCAKGIALLATN-GGKIADY----EGVDKSSKPQL-PLIAINTTAGTASEMTRFAI 194

Query: 638 FDYEEIHAKTGISHNALRPILALIDPLHTLTVPEKVSNYSGFDIFCHALESFTA 799
              E  H K  I      PIL++ DP     +P  ++  +G D   HA+E++ +
Sbjct: 195 ITEETRHIKMAIIDKHTMPILSVNDPETMYGLPPSLTAATGMDALTHAVEAYVS 248


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 260 KNVCVMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFKDAIHFAKEGNFDS 439
           K+  V+ D NV ++   K ++DSL++NG+         V   + S  +     K+   D+
Sbjct: 92  KSAVVLADQNVWNICANK-IVDSLSQNGMTVTKL----VFGGEASLVELDKLRKQCPDDT 146

Query: 440 --FVAIGGGSVMDTCK 481
              + +GGG  MD+ K
Sbjct: 147 QVIIGVGGGKTMDSAK 162


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 GVTREVGQDLVNLNAKNVCVMTDPNVASLSPMKAV 319
           GVT+E+G  +      N+C+  DP VA    +K +
Sbjct: 382 GVTKELGDGMRIRGDINICLTGDPGVAKSQLLKYI 416


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 19  VNLWVQKT*NTMTSRKRIFDLFANDKYCILPMSCARLQRKYSSFKCN 159
           V L + K  +     K  FDLF+N  +C L   C  LQ   SS  C+
Sbjct: 131 VGLAIGKAHSAAVYNKPGFDLFSNYTFCFLGDGC--LQEGVSSEACS 175


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 92  INIASCQCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGL 214
           I +    C A+G + NI     T LKD    + C   RYG+
Sbjct: 138 IVVGESNCSAYGMKENIY----TCLKDLYCSVSCCDCRYGI 174


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 134 LCNRAQDIGKMQYLSFANKSKIRFLDVIVFYVF*TQRLTL 15
           L NR   I + ++L +    KI   D++VFY F   R T+
Sbjct: 251 LVNRLLKITEREFLLYTGILKILKDDLLVFYTFIPPRFTI 290


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 22/95 (23%), Positives = 39/95 (41%)
 Frame = +2

Query: 251 LNAKNVCVMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFKDAIHFAKEGN 430
           LN ++  + +   V S + + + LD      ++   +DK  +EP + +F D     K GN
Sbjct: 128 LNKQSDILNSYERVLSNASVDSALDKKAE--VDIIPFDKSVMEPKNITFNDKSGLTKFGN 185

Query: 431 FDSFVAIGGGSVMDTCKAANLYYSDPDAEFLDYVN 535
            +S+      S        +  Y+D D    D  N
Sbjct: 186 SNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTN 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,852
Number of Sequences: 5004
Number of extensions: 60977
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)