Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P23
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1460 + 33764106-33764303,33764675-33766201                       29   5.4  
01_01_0782 - 6056440-6057954                                           29   7.1  
08_02_1518 + 27644404-27645135                                         28   9.4  

>04_04_1460 + 33764106-33764303,33764675-33766201
          Length = 574

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 211 YFLECSYI---RGPPESPLQESLPASPPA 288
           YFL CSY    +G PE   ++S PA+P A
Sbjct: 541 YFLVCSYFYRYKGEPEVAAEDSPPATPEA 569


>01_01_0782 - 6056440-6057954
          Length = 504

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 192 HNTDCFVFFGMFIHKRTTRVTLTRIFTCFTAGTHLSLPQCYSLAIAQWFLVCFADVSLYK 371
           H+ D F     F   R   V   R F  F AG H  + Q Y+L     F+  F  +  ++
Sbjct: 416 HDPDAFDPERFFSEARREDVVYKRNFLAFGAGPHQCVGQRYALNHLVIFMALFVSLVDFR 475

Query: 372 RQ 377
           R+
Sbjct: 476 RE 477


>08_02_1518 + 27644404-27645135
          Length = 243

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 416 HCRTASIVPSQPRSERIYLAGSLCNL 493
           H R+AS VPS PRS  I + G L NL
Sbjct: 4   HLRSAS-VPSSPRSNEIDIEGQLQNL 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,983
Number of Sequences: 37544
Number of extensions: 383668
Number of successful extensions: 1292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)