Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P21
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    28   1.8  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   4.1  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   7.2  

>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 445 PKRSSQARTDAEPHAAPGANVVQTGTV 525
           P +SSQ+   +E H   G N  +TGTV
Sbjct: 471 PNKSSQSLVSSESHNVEGWNYSETGTV 497


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 225 PRDPPLYSSVILG*AAPRSARPSD 154
           P+DPP Y  V L  A   SA P+D
Sbjct: 12  PKDPPSYEEVALHSALNNSAPPND 35


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 481 PHAAPGANVVQTGTVKPQRQAGV 549
           P AAPG ++    T KPQ   G+
Sbjct: 88  PQAAPGGSLFGASTTKPQAPGGL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,623
Number of Sequences: 5004
Number of extensions: 29280
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)