Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P21
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0512 - 3818743-3819087                                           30   2.5  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    30   2.5  
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331     28   7.5  
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288...    28   7.5  
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    28   9.9  

>07_01_0512 - 3818743-3819087
          Length = 114

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 229 SAPAGGAAVTRPKLTRAACCPQS*TSRGKD---PTPPSCPALALRC 357
           SAP   +A TR   +R  CCPQ    R +D     PPS  A  +RC
Sbjct: 26  SAPTPLSAATRR--SRVCCCPQGRGPRSRDLAAGRPPSSGAEGVRC 69


>02_01_0102 -
           749122-749799,750123-750371,750753-750851,751380-751889,
           752025-753905,754093-754296,754807-754899,755036-755122,
           755241-755328,755533-755645,755943-757259,757398-758672,
           759166-759273
          Length = 2233

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 223 GRSAPAGGAAVTRPKLTRAACCPQS*TSRGKDPT-PPSCPALALRCS 360
           GR   +GG A  R  L +A C P+   S  +D T P S P   ++ S
Sbjct: 508 GRPVESGGIAPERSSLLKAPCLPKVEVSAPEDKTIPASGPMQVMKAS 554


>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
          Length = 384

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 436 MLSPKRSSQARTDAEPHAAPGANVVQT-GTVKPQRQAGVTRAMR 564
           + S  RSS+ART   P  +P    + T    +P+RQ    R  R
Sbjct: 50  LASSSRSSRARTAVRPEPSPNGGALSTHHAAQPRRQRSRPRRQR 93


>02_01_0397 -
           2877242-2878479,2878557-2878861,2879862-2880549,
           2881998-2882016
          Length = 749

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 487 AAPGANVVQTGTVKPQRQAG 546
           A PG N++Q G+ KP+R+ G
Sbjct: 621 AKPGDNILQNGSSKPEREPG 640


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 PAGGAAVTRPKLTRAACCPQS*TSRGKDPTPPSCPALAL 351
           P GGA V++PK T  A  P++     K P PP+ P+  L
Sbjct: 220 PVGGAPVSQPKATAPA--PKA--PGAKAPPPPALPSAPL 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,200
Number of Sequences: 37544
Number of extensions: 257706
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)