Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_P19
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 85 1e-17
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 63 4e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 9e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 2e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 3e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 43 6e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 43 6e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 8e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 42 1e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 40 3e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 39 0.001
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 39 0.001
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.002
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.009
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.012
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.021
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 34 0.027
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.027
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 32 0.11
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.45
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 1.4
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 26 7.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 85.0 bits (201), Expect = 1e-17
Identities = 34/61 (55%), Positives = 50/61 (81%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 544
N+D+P ++E Y+HRIGRTGR+ +KGT+Y +FT N++QA++LVS+L EA Q I P+L+ M
Sbjct: 443 NYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEM 502
Query: 543 A 541
A
Sbjct: 503 A 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/57 (49%), Positives = 40/57 (70%)
Frame = -3
Query: 735 QIXNNFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQII 565
Q+ N +P + E Y+HRIGRTGR+ +KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 486 QLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.1 bits (144), Expect = 9e-11
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 544
N+D P + Y+HRIGRTGR+ + G + AFF +N AK+L+ +LQEANQ L +M
Sbjct: 504 NYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAM 563
Query: 543 A 541
A
Sbjct: 564 A 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.3 bits (142), Expect = 2e-10
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = -3
Query: 735 QIXNNFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQ 556
Q+ N+D PN E Y+HR+GRTGR+ G + F TP + A D+ L+ + Q + +
Sbjct: 738 QLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKE 797
Query: 555 LQSMADR 535
LQ++A +
Sbjct: 798 LQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.0 bits (114), Expect = 4e-07
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 577
NFD+P S YIHRIGRTGR+ + G + FFT + K + V++ +
Sbjct: 362 NFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSS 410
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSN 619
NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 400 NFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEAN 574
N+D P+S + Y+HR+GR GR +KG + F + Q D + E N
Sbjct: 369 NYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 598
N+D P + E YIHRIGR+GR KG + F T + R +D+
Sbjct: 334 NYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 598
N+D P + E YIHRIGR GR KG S F T + R +++
Sbjct: 332 NYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFT 628
NFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 355 NFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 577
N++ S E Y HRIGRTGR+ GT+ F P ++ DL +L +
Sbjct: 590 NYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFT 628
N+D P S+ YIHR+GRT R+ G S A T
Sbjct: 359 NYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 735 QIXNNFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFT 628
Q+ NFD P + YIHR+GRT R+ G S + T
Sbjct: 328 QLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 720 FDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 559
+D P S++ Y+HRIGRT R+ G + F P S L S + AN + P
Sbjct: 521 YDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 544
N+D+P + ++HR+GRT R+ G +Y+ ++ DL L S Q+++
Sbjct: 420 NYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTD 479
Query: 543 AD 538
+D
Sbjct: 480 SD 481
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 720 FDYPNSSEXYIHRIGRTGR-SKSKGTSYAFFTPS 622
+D P+ YIHR+GRT R +K G S F PS
Sbjct: 411 YDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPS 444
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.012
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 711 PNSSEXYIHRIGRTGRSKSKGTSY 640
P++++ YIHRIGRTGR+ G +Y
Sbjct: 371 PSNTDDYIHRIGRTGRAGKTGEAY 394
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.021
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 583
N+D P S Y+HRIGRT R+ +G ++ LV L+
Sbjct: 511 NYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 723 NFDYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 598
++ P++++ Y+HR GRT R+ G S P Q K L
Sbjct: 463 HYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 717 DYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVS 592
D P + YIHR+GRT R G + PS K L S
Sbjct: 361 DAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 735 QIXNNFDYPNSSEXYIHRIGRTGRSKSKG 649
++ N++ P + E Y+HR+GRT R+ G
Sbjct: 574 EVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 711 PNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 559
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 699 EXYIHRIGRTGRSKSKGTSYAF 634
+ Y+HRIGRTGR G S F
Sbjct: 440 QTYLHRIGRTGRFGRVGVSINF 461
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 331 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 444
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -1
Query: 656 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 540
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 678 QYDGCXPPTNXDNQNYYXFDTINIKPSS 761
+Y+G P+N D+ + F+TI + PS+
Sbjct: 116 RYNGFPEPSNTDSTSILSFNTIRLIPST 143
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -3
Query: 717 DYPNSSEXYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSV 589
D P + + HR GR GR+ G + + ++L+ V
Sbjct: 335 DPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,350
Number of Sequences: 5004
Number of extensions: 55633
Number of successful extensions: 139
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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