Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P17
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    71   3e-13
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    30   0.36 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   7.8  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   7.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
 Frame = -2

Query: 677  MXGRXIREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDD 498
            M    IREE LRTYL  YA  Y S+SL  LA  F+LP QRV  +VS+++   E+ A+LD 
Sbjct: 785  MLSEKIREEGLRTYLLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQ 844

Query: 497  PSECAILHRSEPTRMQALALQLADKVGXFG-GFE*AYIRKTRLVLP 363
                 I  R E  ++++L + L++K        E  Y +KT+   P
Sbjct: 845  VHGAIIFERVEINKLESLTVSLSEKTAQLNEANEKLYEQKTQHTNP 890


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 647 LRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLD 501
           L T +   +  +   S   LA  F+L  ++V ++V+ M+I E L AS+D
Sbjct: 295 LETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASID 343


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 586 LTCLNYHVNAYIL*CLK*SSTRSSWHHWMTRAN 488
           L C+NY    YIL  +  SST S   +W    N
Sbjct: 607 LFCVNYLTQKYILMYVSNSSTESGGGYWRPVVN 639


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 484 LSCTVPNQHVCRLWHYSLPTRSEXLVDSNERIFEKQ 377
           L  T+  +H C +W     TR + LVD     F K+
Sbjct: 368 LPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKK 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,557
Number of Sequences: 5004
Number of extensions: 41168
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)