Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P16
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   323   2e-89
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   320   2e-88
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   130   2e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    72   1e-13
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.13 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.29 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    28   1.6  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   8.3  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  323 bits (794), Expect = 2e-89
 Identities = 141/178 (79%), Positives = 160/178 (89%)
 Frame = -2

Query: 676 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACLEPANQMVKCDPRHGKYMACCMLYRG 497
           YPRIHFPLVTY+P++SA KA+HE  SV EITN C EP NQMVKCDPR G+YMA C+LYRG
Sbjct: 266 YPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRG 325

Query: 496 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT 317
           DV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNT
Sbjct: 326 DVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNT 385

Query: 316 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 143
           T+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 386 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  320 bits (786), Expect = 2e-88
 Identities = 141/178 (79%), Positives = 158/178 (88%)
 Frame = -2

Query: 676 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACLEPANQMVKCDPRHGKYMACCMLYRG 497
           YPRIHFPLVTYAP++SA KA+HE  SV EITN C EP NQMVKCDPR G+YMA C+LYRG
Sbjct: 262 YPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRG 321

Query: 496 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT 317
           DV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI  +PP  + G ++AKV RAVCMLSNT
Sbjct: 322 DVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNT 381

Query: 316 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 143
           T+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 382 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  130 bits (315), Expect = 2e-31
 Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
 Frame = -2

Query: 676 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACLEPANQMVKCDPRHGKYMACCMLYRG 497
           +PR+HF +V +AP+ +   +  + +SV E+T    +  N MV  DPRHG+Y+    L+RG
Sbjct: 260 FPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRG 319

Query: 496 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT 317
            V  K+V+  I +++TK +  FV+W P      +   PP      DL   + +   + N+
Sbjct: 320 KVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNS 371

Query: 316 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 146
           T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +  + Y+E G+D
Sbjct: 372 TSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
 Frame = -2

Query: 673 PRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACLEPANQMVKCDP-RHGKYMACCML 506
           PR HF L +Y P  +    E     + +V ++    L P NQMV  +P +   +++   +
Sbjct: 264 PRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDI 323

Query: 505 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 326
            +G+  P DV+ ++  I+ +R   F+ W P   +V ++ + P +     ++ +     ML
Sbjct: 324 IQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----ML 378

Query: 325 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 161
           +N T+IA  + R   ++D +  + AF+  Y  E + E    EF  +R+ +A L  +YE
Sbjct: 379 ANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 29/106 (27%), Positives = 51/106 (48%)
 Frame = -3

Query: 741 SLFLXSTRSEWDLTEFQTNLVXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPP 562
           S F  +T S    + F +  V +  STS  + T  SS   RP  +S  S    +H SS  
Sbjct: 353 SSFSSTTSSSKSSSSFSST-VSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSS 411

Query: 561 TRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSST 424
           ++  ++ PV ++ +     +  +S+    +  SL SKP + ++SS+
Sbjct: 412 SKS-SSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSS 456


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 24/89 (26%), Positives = 33/89 (37%)
 Frame = -3

Query: 633 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 454
           S+P+ P     P   S     + P       P + S        VV   P +  RP++P 
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567

Query: 453 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 367
            P  LS     V PV+  V +   PP  P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 645 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 472
           T  S+ P  PT+   S  +P + T+ ++  +    +TPV ++      CT  TS P   T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459

Query: 471 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 379
              + S P   +N +T       S   TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 28/97 (28%), Positives = 46/97 (47%)
 Frame = -3

Query: 675 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 496
           TPV++S++  T  SS P   T      P + T+ ++  +    +TPV ++      CT  
Sbjct: 507 TPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558

Query: 495 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 385
           TS P   T P   S  ++ S++     PV+ +  TTS
Sbjct: 559 TSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/97 (25%), Positives = 44/97 (45%)
 Frame = -3

Query: 675 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 496
           TP++T++   T  +S+P   T  +  +P + T+ ++  +    +TPV ++      CT  
Sbjct: 420 TPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTS 476

Query: 495 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 385
           TS P   T   + S P   +N +T       S   TS
Sbjct: 477 TSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = -3

Query: 690 TNLVXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAV 511
           T +  TP++T++   T  +S+P   T  +  +P + T+ ++  +    +TPV +S +   
Sbjct: 461 TPVTSTPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTIS 517

Query: 510 CCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 385
             T VTS P   T  +  +  SVL  S+     P++ +  TTS
Sbjct: 518 SSTPVTSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 681  VXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 556
            V  P S +    T +SS+P  P  N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 461 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 604
           S G   +LGY ++     A++V+A + V   HL+ G      D  + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 297 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 124
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 123 EPKSTK 106
           EP+ TK
Sbjct: 208 EPRFTK 213


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 639 QSSLPRRPTMNSFPSPRSQTHASSPPTR 556
           + SLPRRP+     +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -3

Query: 465 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 379
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 484 WVRRHHGTAYSKPCTCHDGG 543
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,152
Number of Sequences: 5004
Number of extensions: 68601
Number of successful extensions: 248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)