Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P13
         (804 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (R...    37   0.68 
UniRef50_A4RY92 Cluster: Predicted protein; n=1; Ostreococcus lu...    36   0.90 
UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and...    35   2.1  
UniRef50_A3CPB8 Cluster: Putative uncharacterized protein; n=1; ...    34   4.8  
UniRef50_A5KBL8 Cluster: Putative uncharacterized protein; n=1; ...    34   4.8  
UniRef50_Q7R425 Cluster: GLP_68_3008_4912; n=1; Giardia lamblia ...    33   8.4  

>UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (RPB5
           homologue), putative; n=11; Aconoidasida|Rep:
           DNA-directed RNA polymerase, subunit (RPB5 homologue),
           putative - Theileria annulata
          Length = 205

 Score = 36.7 bits (81), Expect = 0.68
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -1

Query: 663 IDSARHKQIPKHHDYVLNEEYLASQKNRAK--LITRIRPDEPVVADNVILESNVVKIVRP 490
           ++  +H+ +PKH    + E+    QK + K   I RI+  +PV     + +  VVKI+RP
Sbjct: 132 VNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRP 191

Query: 489 SK 484
           S+
Sbjct: 192 SE 193


>UniRef50_A4RY92 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 168

 Score = 36.3 bits (80), Expect = 0.90
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -3

Query: 661 RQCQTQTNPETSRLRSKRRVFGVTEEQGQTHHQNKTRRTCSGR 533
           R+ QT+   E  RLRS+ R   +TE+Q  T  QNK +R  S +
Sbjct: 100 RRHQTKEQREKERLRSRNRRLQMTEKQRSTEAQNKLKRRASAK 142


>UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and
           III subunit RPABC1; n=16; Eumetazoa|Rep: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 - Homo
           sapiens (Human)
          Length = 210

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 663 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 490
           I+   H+ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+RP
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 489 SK 484
           S+
Sbjct: 197 SE 198


>UniRef50_A3CPB8 Cluster: Putative uncharacterized protein; n=1;
           Streptococcus sanguinis SK36|Rep: Putative
           uncharacterized protein - Streptococcus sanguinis
           (strain SK36)
          Length = 689

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -1

Query: 672 DREIDSARHKQIPKHHDYVLNEE-YLASQKNRAKLITRIRPDEPV-VADNVILESNVVKI 499
           DRE+D     ++PKH DYV     Y    +NR     R+ P+E V V+  V +  +V   
Sbjct: 562 DRELDVTITDELPKHTDYVNGSTVYDDFAQNRLTWRRRVAPEETVEVSFKVRVNQDVDGH 621

Query: 498 VRPSKREVERDIGT 457
           +  S  +V  D+ T
Sbjct: 622 ILQSSAQVSTDLFT 635


>UniRef50_A5KBL8 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1659

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 681  LGYDREIDSARHKQIPKHHDYVLNEEYLASQKN-RAKLITRIRPDEPVVADNVILESNVV 505
            + Y+R I      ++  H+DYV N  +   +   R   +  IR  +  +   V +E NV 
Sbjct: 1250 VNYERRIKGCFFSKLKFHYDYVTNFVFTMFRVYLRRVFLGYIRLRDNRIGKKVSVEKNVF 1309

Query: 504  KIVRPSKREVERDIGTALVRLRR 436
            ++VR   R V+R    A ++L++
Sbjct: 1310 RVVRVISRMVQRQKYYAFLQLQK 1332


>UniRef50_Q7R425 Cluster: GLP_68_3008_4912; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_68_3008_4912 - Giardia lamblia ATCC
           50803
          Length = 634

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 684 RLGYDREIDSARHKQIPKHHDYVLNEEYLAS-QKNRAKLITRIRPDEPVVADNVILESNV 508
           RL    +I SA  K     +DY++  E+LAS  K +A  I  ++  +  + D V++  + 
Sbjct: 399 RLAASLDIISAMAKMATMRYDYIIVGEFLASILKKKASDIIYLKVQQETIGDVVLINKDA 458

Query: 507 VK 502
           VK
Sbjct: 459 VK 460


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,804,843
Number of Sequences: 1657284
Number of extensions: 11970925
Number of successful extensions: 28339
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28333
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)