Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P13
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical ...    32   0.55 
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical
           protein H27M09.2 protein.
          Length = 211

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 663 IDSARHKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVRP 490
           ++   H+ +P+H      E  E LA  K +   + RI+  +PV     +    VVKI+RP
Sbjct: 138 VNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRP 197

Query: 489 SK 484
           S+
Sbjct: 198 SE 199


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 664 NRQCQTQTNPETSRLRSKRRVFGVTEEQGQTHHQN 560
           NRQC    +PE S  R  + V G++  + +  H+N
Sbjct: 412 NRQCHRSRSPEQSNFRPSQTVPGLSSMEQRKAHEN 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,301
Number of Sequences: 27780
Number of extensions: 281664
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)