Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_P10
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 55 6e-08
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 52 4e-07
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 41 0.001
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 39 0.006
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 37 0.022
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 34 0.12
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 33 0.36
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601... 29 4.5
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741... 29 4.5
11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964... 29 5.9
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 29 5.9
03_05_0078 + 20555296-20555560,20555643-20555887,20555947-205561... 28 7.8
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = -1
Query: 583 FFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKYGKS 446
+FA+ L SMKG+GT+D TLIR+VV+R+EID+ IK + +KY KS
Sbjct: 233 YFAKVLRKSMKGMGTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKS 278
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 553 KGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKYGKS 446
K +GT++KT IRI RS + + A+ Y +S
Sbjct: 168 KRLGTDEKTFIRIFTERSWAHMASVASAYHHMYDRS 203
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = -1
Query: 583 FFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSPGD 437
+FA+ L+ +MKG+GTND TLIR+V +R+E+D+ IK + Y +S D
Sbjct: 276 YFAKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLAD 324
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = -1
Query: 580 FAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKY 455
FAE + +S+ G+GT + L R++VSR+EID+ I++ + +Y
Sbjct: 235 FAEVIRHSILGLGTYEDMLTRVIVSRAEIDMRHIREEYKVRY 276
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/42 (38%), Positives = 30/42 (71%)
Frame = -1
Query: 580 FAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKY 455
FAE + S+ G+GT+++ L R +VSR+E+D+ +K+ + +Y
Sbjct: 300 FAEVIRTSILGLGTDEEMLTRGIVSRAEVDMEKVKEEYKVRY 341
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 36.7 bits (81), Expect = 0.022
Identities = 14/42 (33%), Positives = 31/42 (73%)
Frame = -1
Query: 583 FFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEK 458
+F + + ++ G+GT++ +L RI+ +R+E+DL IK+A+ ++
Sbjct: 172 YFEKVIRLALGGMGTDENSLTRIITTRAEVDLKLIKEAYQKR 213
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 574 ERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKYGK 449
E+L + KG GTN+K +I I+ R I++A+ E YG+
Sbjct: 18 EQLRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAYAEAYGE 59
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/42 (30%), Positives = 30/42 (71%)
Frame = -1
Query: 583 FFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEK 458
+F + + ++ G+GT++ +L RI+ +R+E+DL I +A+ ++
Sbjct: 247 YFEKVIRLAIAGMGTDENSLTRIITTRAEVDLKLITEAYQKR 288
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 731 RSYQQXRQXFAEYEALTGKDIGDSIKKXFSGSIEKGMLAIAKCV 600
RS Q R F Y+ + G D ++KK G E+ + + KC+
Sbjct: 198 RSIPQLRLAFCSYKHIYGHDYTKALKKNGFGEFEQSLRVVVKCI 241
>05_02_0047 +
6006808-6007129,6009229-6009890,6009980-6010129,
6010765-6010857,6011370-6011675
Length = 510
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 572 APVLLDEGHRHQRQDAHPHRGEPLRDRPRGHQAGIPREVRQV 447
AP+L H H H H E + G + +P +VR V
Sbjct: 283 APLLQPHSHSHSHPHGHGHGHELAQPEGSGGEGEVPAQVRSV 324
>02_02_0440 -
10273032-10273259,10273423-10273461,10273875-10274123,
10274203-10274329,10275009-10275251,10275359-10275457,
10275566-10275681,10275813-10276039,10276164-10276276,
10276402-10276522,10276641-10276855,10277042-10277225,
10277739-10278048,10278155-10278249,10278473-10278485
Length = 792
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 456 YFSRNACLMSPRSISERLTTMRMSVLS 536
YF AC+ P SERL R+SVL+
Sbjct: 519 YFLAAACIFEPNRASERLAWARVSVLA 545
>11_06_0489 -
24196037-24196105,24196199-24196279,24196358-24196438,
24196513-24196614,24196693-24196782,24196865-24196945,
24197021-24197122,24197198-24197287,24197368-24197448,
24197524-24197622,24197720-24198055,24198142-24198228,
24198318-24198413,24198499-24198732,24198792-24199036,
24199119-24199383
Length = 712
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 399 HA*SHPLGLQRSRSPGDLPYFSRNACLMSPRSISERLTTMRMSVLSLVP 545
H+ S G R +P +PY NA +S S+ +R T +M+V S+VP
Sbjct: 548 HSISSANGNGRRFNPS-IPYERTNAKQLSGESLGKRSITSQMNVESMVP 595
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 548 HRHQRQDAHPHRGEPLRDRPRGHQAGIPREVRQV 447
H H R H HR + +R G AG ++ R+V
Sbjct: 138 HSHHRHGGHHHRSDSVRGGGTGATAGSDKDGREV 171
>03_05_0078 +
20555296-20555560,20555643-20555887,20555947-20556180,
20556451-20556537,20556624-20556959,20557057-20557194,
20557231-20557311,20557392-20557480,20557750-20557813,
20557896-20557985,20558064-20558186
Length = 583
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 450 LPYFSRNACLMSPRSISERLTTMRMSVLSLVP 545
+PY NA +S S+ +R T +M+V S+VP
Sbjct: 505 IPYERTNAKQLSEESLGKRSRTSQMNVKSMVP 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,797
Number of Sequences: 37544
Number of extensions: 315418
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -