Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P06
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    27   0.14 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   9.4  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   9.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.4  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 190 IQHYRISLCSVERGEAETHRVXXXXXXXYRVPCYPPWKPLPSPYRSRPFSA*CAPSDTSP 369
           I  Y  SL   +  +  TH          R    PP + +PSP RS P  A       SP
Sbjct: 43  INSYLFSLSLAQNNQLFTHH-----KAPIRPVALPPKREIPSPKRSSPILA--EKVSVSP 95

Query: 370 -LP*YPSPP 393
             P  PSPP
Sbjct: 96  TTPPTPSPP 104


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 630 DSVHLFCNRLLYRSRAKPAKYLLAER 707
           D V +FCNR L R +    K   AER
Sbjct: 103 DKVTVFCNRDLGREKQFIVKLPSAER 128



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 78   LPVKSAFTNDLVHQNFEDD 134
            +P K  F N  V++ FE+D
Sbjct: 1514 IPAKDVFENGHVNKAFEED 1532


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 630 DSVHLFCNRLLYRSRAKPAKYLLAER 707
           D V +FCNR L R +    K   AER
Sbjct: 103 DKVTVFCNRDLGREKQFIVKLPSAER 128



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 78   LPVKSAFTNDLVHQNFEDD 134
            +P K  F N  V++ FE+D
Sbjct: 1514 IPAKDVFENGHVNKAFEED 1532


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 630 DSVHLFCNRLLYRSRAKPAKYLLAER 707
           D V +FCNR L R +    K   AER
Sbjct: 103 DKVTVFCNRDLGREKQFIVKLPSAER 128



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 78   LPVKSAFTNDLVHQNFEDD 134
            +P K  F N  V++ FE+D
Sbjct: 1514 IPAKDVFENGHVNKAFEED 1532


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 630 DSVHLFCNRLLYRSRAKPAKYLLAER 707
           D V +FCNR L R +    K   AER
Sbjct: 103 DKVTVFCNRDLGREKQFIVKLPSAER 128



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 78   LPVKSAFTNDLVHQNFEDD 134
            +P K  F N  V++ FE+D
Sbjct: 1514 IPAKDVFENGHVNKAFEED 1532


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 326 HDRSRRDVHLLTRHRCHNIRR 388
           H R  RD HL T  R H   R
Sbjct: 16  HKRFTRDHHLKTHMRLHTGER 36


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 361 CQKVHITPRTVVSGM 317
           CQK  ITP T  +G+
Sbjct: 34  CQKAPITPDTEATGL 48


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 326 HDRSRRDVHLLTRHRCHNIRR 388
           H R  RD HL T  R H   R
Sbjct: 169 HKRFTRDHHLKTHMRLHTGER 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,756
Number of Sequences: 336
Number of extensions: 3391
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)