Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P04
         (844 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CRJ5 Cluster: WD repeat protein; n=2; Cryptosporidium...    35   2.2  
UniRef50_A2EIJ8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.1  

>UniRef50_Q5CRJ5 Cluster: WD repeat protein; n=2; Cryptosporidium|Rep:
            WD repeat protein - Cryptosporidium parvum Iowa II
          Length = 1117

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +2

Query: 116  NKFKGDCERFVSFFYEISSPNFGVNFKITKLNNKTKGTIVICA*QLLDIIE 268
            +K + +C RF+S  Y I   + G N+K+  +   +KG I+I + QLLD+ E
Sbjct: 890  DKKQNNC-RFISLDYVIEPISMGENYKLIVIVGSSKGEILIFSFQLLDLGE 939


>UniRef50_A2EIJ8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 459

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 482 SESERPDSLSETLNAFLTENCNYHYSNVSLLLDIVLTQSLPVFFFFEFMAWY 637
           S S + +SL+E  N  + +N NY   N  L L +  T  +P+ F + F++++
Sbjct: 12  SASAQSESLAEIWN--MQKNANYIDKNFPLFLSVFETAKIPILFVYPFLSFF 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,283,007
Number of Sequences: 1657284
Number of extensions: 13482549
Number of successful extensions: 27991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27988
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)