Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_P03
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 34 0.15
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 31 1.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 30 1.8
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 3.2
05_03_0039 - 7621613-7622695 29 3.2
10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308 29 4.2
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 29 4.2
04_03_0904 + 20717005-20718087 28 7.4
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 9.7
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 33.9 bits (74), Expect = 0.15
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = -1
Query: 651 TLTAQCPSMSRS---QFRTPSRYQCPPLTPSR--STSRTQ*KRPCRSQLTSPSTGHTQ-- 493
T+ A P+ RS + R + PPL P + + + KRP S ++ S H++
Sbjct: 4 TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSCFHSEVI 63
Query: 492 STSRSTCLCTLRSPYRTQLRYRYQ 421
S + +TC +L + R + R RYQ
Sbjct: 64 SATSTTCPTSLAAAQRPEKRPRYQ 87
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = -1
Query: 732 SQTSXYPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSR 553
S++ Y R + P R ++ +P+K + S S + R+PSR P +P R S
Sbjct: 216 SRSRSYSRSRS-PRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSA 274
Query: 552 TQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLR 457
+ K P +S+ S S + ++ C+ L+
Sbjct: 275 S--KSPVKSRSLSRSPSPVRDINQKLCIFRLQ 304
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = -1
Query: 774 PSKGPXGQTXPRAYSQTSXYPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSR 595
P P PR + S PRR A P +N+ PTP + P SRS R SR
Sbjct: 209 PKGSPRDTQSPRGSPRDSRSPRRSASP-PNGRNRSPTP--NASRSPAPRDSRSPMRADSR 265
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 468 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 557
+GTC T G+ TGM TG T TG G
Sbjct: 99 SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128
>05_03_0039 - 7621613-7622695
Length = 360
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 605 PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 489
P+ G P P + HP P + + P HP + P P
Sbjct: 162 PKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 608 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 489
VP P P + HP P + + P HP+ + P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228
>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
Length = 735
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -1
Query: 132 LWLSYEKLSPIFISNSK*VLVAREIKVFFSNNKQIL 25
++ S +K +P++IS + + AREIKV +NN I+
Sbjct: 433 MYKSRKKGTPLYISGKR-MFTAREIKVITNNNSTII 467
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 613 LASRHGRALGGQRVL*RGRALVFLPGYGTGFS 708
+ASR RA+G Q V+ G AL F G TGF+
Sbjct: 102 VASRVTRAMGRQAVMVMGGALFFAGGAVTGFA 133
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Frame = -1
Query: 774 PSKGPXGQTXPRAYSQT----SXYPRREARPIXR*KNQC-PTPLKYTLTAQCPSMSRSQF 610
P+ P + P Y+ T + P+ + P K Q PTP YT T PS
Sbjct: 124 PTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPK 183
Query: 609 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS 508
TP+ Y P PS P T PS
Sbjct: 184 PTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPS 217
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 459 SMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 557
+M GT F+ TG G +TG G GT TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,495
Number of Sequences: 37544
Number of extensions: 282313
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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