Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P02
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.7  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 494 AGLQCRLVQQPPGLGRQPRTRLV 426
           A + C      P  GR PRTR V
Sbjct: 192 AWVYCTRYSDRPSSGRSPRTRRV 214



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 280 ERERPSVEADACSAGD 233
           +RE P+++ ++CS+ D
Sbjct: 8   DRESPNIDHNSCSSDD 23


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 208 PRVRAESEAGRARGQLRRPPALG 140
           P VRA  +A  ARG  R   A G
Sbjct: 279 PAVRAAGDAAAARGAARADGAGG 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,963
Number of Sequences: 336
Number of extensions: 4101
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)